def testStats1D(self):
import numpy as np
ex2 = flow.ChannelStatisticOp(name="Stats1D",
by=["Dox"],
channel="V2-A",
function=np.mean).apply(self.ex)
flow.Stats1DView(statistic=("Stats1D", "mean"),
variable="Dox").plot(ex2)
flow.Stats1DView(statistic=("Stats1D", "mean"),
variable="Dox",
variable_scale="log",
scale="logicle").plot(ex2)
def testBadErrorStat(self):
self.ex = flow.ChannelStatisticOp(name="ByDox_BAD",
channel="Y2-A",
by=['Dox'],
function=flow.geom_sd_range).apply(
self.ex)
self.view = flow.Stats1DView(statistic=("ByDox", "geom_mean"),
error_statistic=("ByDox_BAD",
"geom_sd_range"),
variable="Dox",
huefacet="T")
self.assertRaises(util.CytoflowViewError, self.view.plot, self.ex)
def setUp(self):
ImportedDataTest.setUp(self)
self.ex = flow.ThresholdOp(name = "T",
channel = "Y2-A",
threshold = 500).apply(self.ex)
self.ex = flow.ChannelStatisticOp(name = "ByDox",
channel = "Y2-A",
by = ['T', 'Dox'],
function = flow.geom_mean).apply(self.ex)
self.ex = flow.ChannelStatisticOp(name = "ByDox",
channel = "Y2-A",
by = ['T', 'Dox'],
function = flow.geom_sd_range).apply(self.ex)
self.view = flow.Stats1DView(statistic = ("ByDox", "geom_mean"),
error_statistic = ("ByDox", "geom_sd_range"),
variable = "Dox",
huefacet = "T")
util.expand_method_parameters(Stats1DView, Stats1DView.plot)
if __name__ == '__main__':
import cytoflow as flow
tube1 = flow.Tube(file = '../../cytoflow/tests/data/Plate01/RFP_Well_A3.fcs',
conditions = {"Dox" : 10.0})
tube2 = flow.Tube(file = '../../cytoflow/tests/data/Plate01/CFP_Well_A4.fcs',
conditions = {"Dox" : 1.0})
ex = flow.ImportOp(conditions = {"Dox" : "float"}, tubes = [tube1, tube2])
thresh = flow.ThresholdOp()
thresh.name = "Y2-A+"
thresh.channel = 'Y2-A'
thresh.threshold = 2005.0
ex2 = thresh.apply(ex)
s = flow.Stats1DView()
s.by = "Dox"
s.ychannel = "Y2-A"
s.yfunction = np.mean
s.huefacet = "Y2-A+"
plt.ioff()
s.plot(ex2)
plt.show()
def testStats1D(self):
import numpy as np
flow.Stats1DView(name="Stats1D",
by="Dox",
ychannel="V2-A",
yfunction=np.mean).plot(self.ex)
