def NESTSimulation(self, load_mod=True):
layer_IDs = self.newSimulation.NESTSimulation(self.mosaic, load_mod)
self.loadLayers(layer_IDs)
[self.potentials, self.spikes
] = self.newSimulation.runSimulation(self.layers_to_record,
self.s_layers_to_record)
data_analysis.updatePSTH(self.simtime, self.spikes,
self.s_layers_to_record, self.selected_cell,
self.PSTHs, self.bin_size, 0)
def NESTSimulation(self, trial, stim):
layer_IDs = self.newSimulation.NESTSimulation(
data_analysis.loadSpikes(self.newSimulation.Params['N_LGN'],
self.retina_labels, self.spike_folder,
"retina", stim, trial, 0))
self.loadLayers(layer_IDs)
[self.potentials, self.spikes
] = self.newSimulation.runSimulation(self.layers_to_record,
self.layers_to_record,
self.record_Vm)
data_analysis.updatePSTH(self.simtime, self.spikes,
self.layers_to_record, self.selected_cell,
self.PSTHs, self.bin_size, self.layer_sizes)
def NESTSimulation(self, load_mod=True):
layer_IDs = self.newSimulation.NESTSimulation(self.mosaic, load_mod)
self.loadLayers(layer_IDs)
[self.potentials, self.spikes
] = self.newSimulation.runSimulation(self.layers_to_record,
self.s_layers_to_record)
data_analysis.updatePSTH(self.simtime, self.spikes,
self.s_layers_to_record, self.selected_cell,
self.PSTHs, self.bin_size, 0)
if self.usetop_PSTHs:
data_analysis.updatePSTH(
self.simtime, self.spikes, self.s_layers_to_record,
list(
np.arange(self.newSimulation.Params['N'] *
self.newSimulation.Params['N'])), self.top_PSTHs,
self.bin_size, 0)
def NESTSimulation(self, trial):
layer_IDs = self.newSimulation.NESTSimulation(
data_analysis.loadSpikes(self.newSimulation.Params['N_LGN'],
self.retina_labels, self.spike_folder,
"retina", self.stim, trial, 0))
self.loadLayers(layer_IDs)
[self.potentials, self.spikes
] = self.newSimulation.runSimulation(self.layers_to_record,
self.layers_to_record,
self.record_Vm)
data_analysis.updatePSTH(self.simtime, self.spikes,
self.layers_to_record, self.selected_cell,
self.PSTHs, self.bin_size, self.layer_sizes)
if self.usetop_PSTHs:
# Selected cells are passed as a list although the values of this list
# are not used. layer_sizes is used instead.
data_analysis.updatePSTH(self.simtime,
self.spikes, self.layers_to_record,
list(np.arange(2)), self.top_PSTHs,
self.bin_size, self.layer_sizes)