def test_fixity_generated_by(monkeypatch, mongodb_settings, agave,
generator_uuid):
monkeypatch.setenv('STORAGE_SYSTEM_PREFIX_OVERRIDE', DATA_DIR)
fixity_store = FixityStore(mongodb_settings, agave=agave)
for fname, cksum, tsize, ftype in files.TESTS:
# 1179fdd6-71e0-504e-bab1-021ce3a72e35 is tests-pytest
resp = fixity_store.index(fname, generated_by=generator_uuid)
assert generator_uuid in resp['generated_by']
resp = fixity_store.index(fname, generated_by=[generator_uuid])
assert generator_uuid in resp['generated_by']
def test_fixity_no_overrde_child_of(monkeypatch, mongodb_settings, agave):
monkeypatch.setenv('STORAGE_SYSTEM_PREFIX_OVERRIDE', DATA_DIR)
fixity_store = FixityStore(mongodb_settings, agave=agave)
file_store = FileStore(mongodb_settings)
for fname, cksum, tsize, ftype in files.TESTS:
file_uuid = file_store.get_typeduuid(fname, binary=False)
# This is one of the test files not indexed in the Fixity test collection
resp = fixity_store.index(
fname, child_of='105fb204-530b-5915-9fd6-caf88ca9ad8a')
assert resp['child_of'] == [file_uuid]
def test_fixity_limit_rate_pause(monkeypatch, mongodb_settings, agave):
monkeypatch.setenv('STORAGE_SYSTEM_PREFIX_OVERRIDE', DATA_DIR)
fixity_store = FixityStore(mongodb_settings,
batch_size=5,
batch_window=1,
except_on_limit=False,
agave=agave)
for fname, cksum, tsize, ftype in files.TESTS:
resp = fixity_store.index(fname)
assert resp['type'] == ftype
def test_fixity_limit_rate_exception(monkeypatch, mongodb_settings, agave):
monkeypatch.setenv('STORAGE_SYSTEM_PREFIX_OVERRIDE', DATA_DIR)
fixity_store = FixityStore(mongodb_settings,
batch_size=5,
batch_window=1,
except_on_limit=True,
agave=agave)
with pytest.raises(RateLimitExceeded):
for fname, cksum, tsize, ftype in files.TESTS:
resp = fixity_store.index(fname)
assert resp['type'] == ftype
def test_fixity_normpath(mongodb_settings, filename, fuuid, agave):
base = FixityStore(mongodb_settings, agave=agave)
identifier_string_uuid = base.get_typeduuid(filename, binary=False)
assert identifier_string_uuid == fuuid
def test_fixity_checksum(monkeypatch, mongodb_settings, agave):
monkeypatch.setenv('STORAGE_SYSTEM_PREFIX_OVERRIDE', DATA_DIR)
fixity_store = FixityStore(mongodb_settings, agave=agave)
for fname, cksum, tsize, ftype in files.TESTS:
resp = fixity_store.index(fname)
assert resp['checksum'] == cksum
def test_fixity_pathmapping(monkeypatch, mongodb_settings, agave, filename,
level, ftype):
monkeypatch.setenv('STORAGE_SYSTEM_PREFIX_OVERRIDE', DATA_DIR)
fixity_store = FixityStore(mongodb_settings, agave=agave)
resp = fixity_store.index(filename)
assert resp['type'] == ftype
def test_fixity_delete(mongodb_settings):
fixity_store = FixityStore(mongodb_settings)
for fname, cksum, tsize, ftype in files.TESTS:
doc = fixity_store.find_one_by_id(name=fname)
fixity_store.delete_document(doc['uuid'])