def print_percentages():
attributes = ["original_name", "original_citation", "page_described", "authority", "year"]
parent_of_taxon = {}
def _find_parent(taxon):
if taxon.is_page_root:
return taxon.id
elif taxon.id in parent_of_taxon:
return parent_of_taxon[taxon.id]
else:
return _find_parent(taxon.parent)
for taxon in Taxon.select():
parent_of_taxon[taxon.id] = _find_parent(taxon)
counts_of_parent = collections.defaultdict(lambda: collections.defaultdict(int))
for name in Name.select():
parent_id = parent_of_taxon[name.taxon.id]
counts_of_parent[parent_id]["total"] += 1
for attribute in attributes:
if getattr(name, attribute) is not None:
counts_of_parent[parent_id][attribute] += 1
for parent_id, data in counts_of_parent.items():
parent = Taxon.filter(Taxon.id == parent_id)[0]
print("FILE", parent)
total = data["total"]
del data["total"]
print("Total", total)
for attribute in attributes:
percentage = data[attribute] * 100.0 / total
print("%s: %s (%.2f%%)" % (attribute, data[attribute], percentage))
def add_original_names():
for name in Name.select():
if name.original_citation and not name.original_name:
message = u"Name {} is missing an original name, but has original citation {{{}}}:{}".format(
name.description(), name.original_citation, name.page_described
)
name.original_name = getinput.get_line(message, handlers={"o": lambda _: name.open_description()})
if not name.page_described:
name.page_described = getinput.get_line(
"Enter page described",
handlers={"o": lambda _: name.open_description()},
should_stop=lambda line: line == "s",
)
name.save()
def check_refs():
for name in Name.select():
# if there is an original_citation, check whether it is valid
if name.original_citation:
if not cite_exists(name.original_citation):
print("Name:", name.description())
print("Warning: invalid original citation:", name.original_citation)
elif name.verbatim_citation and may_be_citation(name.verbatim_citation):
if cite_exists(name.verbatim_citation):
name.original_citation = name.verbatim_citation
name.verbatim_citation = None
name.save()
elif must_be_citation(name.verbatim_citation):
print("Name:", name.description())
print("Warning: invalid citation:", name.verbatim_citation)
def dup_names():
original_year = collections.defaultdict(list)
for name in Name.select():
if name.original_name is not None and name.year is not None:
original_year[(name.original_name, name.year)].append(name)
return [original_year]
