Esempi in Python per make_pairwise_aligner

Esempio n. 1

 def _align_seqs(self,
                 seq1,
                 seq2,
                 match=1,
                 mismatch=2,
                 gap_open=4,
                 gap_extend=1):
   pw_aligner = aligner.make_pairwise_aligner(
       seq1,
       match=match,
       mismatch=mismatch,
       gap_open_penalty=gap_open,
       gap_extend_penalty=gap_extend)
   return pw_aligner.align(seq2)

Esempio n. 2

File: aligner_test.py Progetto: kong75/deepvariant

 def _align_seqs(self,
                 seq1,
                 seq2,
                 match=1,
                 mismatch=2,
                 gap_open=4,
                 gap_extend=1):
   pw_aligner = aligner.make_pairwise_aligner(
       seq1,
       match=match,
       mismatch=mismatch,
       gap_open_penalty=gap_open,
       gap_extend_penalty=gap_extend)
   return pw_aligner.align(seq2)