def initialize(self):
"""
Initialise the processing
"""
# Get the start time
start_time = time()
# Ensure the reflections contain bounding boxes
assert "bbox" in self.reflections, "Reflections have no bbox"
# Split the reflections into partials
self._split_reflections()
# Create the reflection manager
frames = self.experiments[0].scan.get_array_range()
self.manager = ReflectionManagerPerImage(frames, self.reflections)
# Parallel reading of HDF5 from the same handle is not allowed. Python
# multiprocessing is a bit messed up and used fork on linux so need to
# close and reopen file.
for exp in self.experiments:
if exp.imageset.reader().is_single_file_reader():
exp.imageset.reader().nullify_format_instance()
# Set the initialization time
self.time.initialize = time() - start_time
def initialize(self):
'''
Initialise the processing
'''
from dials_algorithms_integration_integrator_ext import ReflectionManagerPerImage
from time import time
# Get the start time
start_time = time()
# Ensure the reflections contain bounding boxes
assert "bbox" in self.reflections, "Reflections have no bbox"
# Split the reflections into partials
self._split_reflections()
# Create the reflection manager
frames = self.experiments[0].scan.get_array_range()
self.manager = ReflectionManagerPerImage(frames, self.reflections)
# Parallel reading of HDF5 from the same handle is not allowed. Python
# multiprocessing is a bit messed up and used fork on linux so need to
# close and reopen file.
from dxtbx.imageset import SingleFileReader
for exp in self.experiments:
if isinstance(exp.imageset.reader(), SingleFileReader):
exp.imageset.reader().nullify_format_instance()
# Set the initialization time
self.time.initialize = time() - start_time
def initialize(self):
"""
Initialise the processing
"""
# Get the start time
start_time = time()
# Ensure the reflections contain bounding boxes
assert "bbox" in self.reflections, "Reflections have no bbox"
# Split the reflections into partials
self._split_reflections()
# Create the reflection manager
frames = self.experiments[0].scan.get_array_range()
self.manager = ReflectionManagerPerImage(frames, self.reflections)
# Set the initialization time
self.time.initialize = time() - start_time