def put_accession(self, accession_number, dest: Orthanc):
dixels = self.find_items_for(accession_number)
for d in dixels:
# logging.debug(type(d))
d = self.filehandler.get(d, view="file")
dest.put(d)
def test_psend(setup_orthanc0, setup_orthanc1):
O = Orthanc(peername="peer0")
print(O)
O.check()
O2 = Orthanc(port=8043, peername="peer0")
print(O2)
O2.check()
dicom_dir = find_resource("resources/dcm")
D = DcmDir(path=dicom_dir)
d = D.get("IM2263", view=DixelView.TAGS_FILE)
O2.put(d)
logging.debug(O2.gateway._get("peers"))
O2.psend(d.oid(), O)
e = O.get(d.oid(), level=DicomLevel.INSTANCES)
logging.debug(e)
assert d.oid() == e.oid()
def test_orthanc_upload(setup_orthanc0):
logging.debug("Test Orthanc Upload")
O = Orthanc()
dicom_dir = find_resource("resources/dcm")
D = DcmDir(path=dicom_dir)
d = D.get("IM2263", view=DixelView.TAGS_FILE)
O.put(d)
q = {"PatientID": "AW15119516.678.1392297407"}
result = O.find(q)
if result:
id = result[0]
logging.debug(id)
result = O.exists(id)
logging.debug(result)
assert (result)
O.delete(d)
result = O.exists(id)
assert (not result)
def orth_test_runner():
O = Orthanc()
dicom_dir = find_resource("resources/dcm")
D = DcmDir(path=dicom_dir)
print("Starting script")
time.sleep(1)
d = D.get("IM2263", view=DixelView.FILE)
O.put(d)
O.check()
print("Ending script")
def _handle_instance_in_dcm_dir(item: Dixel, orth: Orthanc, salt: str):
orth.put(item)
anon = ShamDixel.from_dixel(item, salt=salt)
afile = orth.anonymize(anon, replacement_map=anon.orthanc_sham_map())
anon.file = afile
orth.put(anon)
orth.delete(item)
anon_study_id = anon.sham_parent_oid(DCMLv.STUDIES)
logging.debug(anon_study_id)
logging.debug(tagged_studies)
if anon_study_id not in tagged_studies:
logging.debug("Tagging parent study: {}".format(anon_study_id))
siren_info = pack_siren_info(anon)
orth.gateway.put_metadata(anon_study_id, DCMLv.STUDIES, "siren_info",
siren_info)
tagged_studies.append(anon_study_id)
def poll(self, dest: Orthanc = None):
if datetime.now() > self._next_study:
print("{}: Study ready to push".format(self.station_name))
study = self.gen_study()
pprint(study.tags)
for d in study.instances():
d.gen_file()
if dest:
dest.put(d)
delay = 60 * 60 / self.studies_per_hour
R = random.Random()
delay = R.randint(int(0.5 * delay), int(1.5 * delay))
self._next_study = datetime.now() + timedelta(seconds=delay)
print("{}: Next study at {}".format(self.station_name,
self._next_study))
else:
logging.debug("No study, next at {}".format(self._next_study))
time.sleep(self.action_interval)
def test_anon(setup_orthanc0):
O = Orthanc()
dicom_dir = find_resource("resources/dcm")
D = DcmDir(path=dicom_dir)
d = D.get("IM2263", view=DixelView.TAGS_FILE)
O.put(d)
d.tags["AccessionNumber"] = "123456"
d.tags["PatientBirthDate"] = "20000101"
d.tags["PatientID"] = "ABC"
d.tags["PatientName"] = "XYZ"
d.level = DicomLevel.STUDIES
e = ShamDixel.from_dixel(d)
rep = e.orthanc_sham_map()
O.anonymize("959e4e9f-e954be4e-11917c87-09d0f98f-7cc39128",
level=DicomLevel.STUDIES,
replacement_map=rep)
import os, yaml
from diana.apis import DcmDir, Orthanc
D = DcmDir(path="/data")
svcs_t = os.environ.get("DIANA_SERVICES")
svcs = yaml.load(svcs_t)
print(svcs)
args = svcs.get("renalstone")
O = Orthanc(**args)
for d in D.files(rex="*.zip"):
file_set = D.get_zipped(d)
for f in file_set:
O.put(f)
