def __init__(self, graph_type, are_bnodes_skolemized):
super().__init__(graph_type, are_bnodes_skolemized, 'sgd')
self.dataset = Dataset(
'sgd', 'SGD', 'https://www.yeastgenome.org/', None,
None)
self.global_terms = Source.open_and_parse_yaml('../../translationtable/global_terms.yaml')
self.apo_term_id = SGD.make_apo_map()
def __init__(self, graph_type, are_bnodes_skolemized):
super().__init__(graph_type, are_bnodes_skolemized, 'sgd')
self.dataset = Dataset('sgd', 'SGD', 'https://www.yeastgenome.org/',
None, None)
self.global_terms = Source.open_and_parse_yaml(
'../../translationtable/global_terms.yaml')
self.apo_term_id = SGD.make_apo_map()
def __init__(self, graph_type, are_bnodes_skolemized):
super().__init__(graph_type, are_bnodes_skolemized, 'mychem')
self.dataset = Dataset(
'mychem', 'MYCHEM', 'https://mychem.info/', None,
None)
self.global_terms = Source.open_and_parse_yaml('../../translationtable/global_terms.yaml')
self.inchikeys = MyChem.chunks(l=MyChem.get_inchikeys(), n=10)
self.drugbank_targets = list()
self.drugcentral_interactors = list()
def __init__(self, graph_type, are_bnodes_skolemized):
super().__init__(graph_type, are_bnodes_skolemized, 'mychem')
self.dataset = Dataset(
'mychem', 'MYCHEM', 'https://mychem.info/', None,
None)
self.global_terms = Source.open_and_parse_yaml('../../translationtable/global_terms.yaml')
self.inchikeys = MyChem.chunks(l=MyChem.get_inchikeys(), n=10)
self.drugbank_targets = list()
self.drugcentral_interactors = list()
def __init__(self, graph_type, are_bnodes_skolemized):
super().__init__(graph_type, are_bnodes_skolemized, 'rgd')
self.dataset = Dataset('rgd', 'RGD', 'http://rgd.mcw.edu/', None, None)
self.global_terms = Source.open_and_parse_yaml(
'../../translationtable/global_terms.yaml')
