def test_length_memory_leaks():
# Test some dtypes
dtypes = [np.float32, np.float64, np.int32, np.int64]
for dtype in dtypes:
rng = np.random.RandomState(1234)
NB_STREAMLINES = 10000
streamlines = [rng.randn(rng.randint(10, 100), 3).astype(dtype) for _ in range(NB_STREAMLINES)]
list_refcount_before = get_type_refcount()["list"]
lengths = ds_length(streamlines)
list_refcount_after = get_type_refcount()["list"]
# Calling `ds_length` shouldn't increase the refcount of `list`
# since the return value is a numpy array.
assert_equal(list_refcount_after, list_refcount_before)
# Test mixed dtypes
rng = np.random.RandomState(1234)
NB_STREAMLINES = 10000
streamlines = []
for i in range(NB_STREAMLINES):
dtype = dtypes[i % len(dtypes)]
streamlines.append(rng.randn(rng.randint(10, 100), 3).astype(dtype))
list_refcount_before = get_type_refcount()["list"]
lengths = ds_length(streamlines)
list_refcount_after = get_type_refcount()["list"]
# Calling `ds_length` shouldn't increase the refcount of `list`
# since the return value is a numpy array.
assert_equal(list_refcount_after, list_refcount_before)
def test_length_memory_leaks():
# Test some dtypes
dtypes = [np.float32, np.float64, np.int32, np.int64]
for dtype in dtypes:
rng = np.random.RandomState(1234)
NB_STREAMLINES = 10000
streamlines = [rng.randn(rng.randint(10, 100), 3).astype(dtype)
for _ in range(NB_STREAMLINES)]
list_refcount_before = get_type_refcount()["list"]
lengths = ds_length(streamlines)
list_refcount_after = get_type_refcount()["list"]
# Calling `ds_length` shouldn't increase the refcount of `list`
# since the return value is a numpy array.
assert_equal(list_refcount_after, list_refcount_before)
# Test mixed dtypes
rng = np.random.RandomState(1234)
NB_STREAMLINES = 10000
streamlines = []
for i in range(NB_STREAMLINES):
dtype = dtypes[i % len(dtypes)]
streamlines.append(rng.randn(rng.randint(10, 100), 3).astype(dtype))
list_refcount_before = get_type_refcount()["list"]
lengths = ds_length(streamlines)
list_refcount_after = get_type_refcount()["list"]
# Calling `ds_length` shouldn't increase the refcount of `list`
# since the return value is a numpy array.
assert_equal(list_refcount_after, list_refcount_before)
def test_length():
# Test length of only one streamline
length_streamline_cython = ds_length(streamline)
length_streamline_python = length_python(streamline)
assert_almost_equal(length_streamline_cython, length_streamline_python)
length_streamline_cython = ds_length(streamline_64bit)
length_streamline_python = length_python(streamline_64bit)
assert_almost_equal(length_streamline_cython, length_streamline_python)
# Test computing length of multiple streamlines of different nb_points
length_streamlines_cython = ds_length(streamlines)
for i, s in enumerate(streamlines):
length_streamline_python = length_python(s)
assert_array_almost_equal(length_streamlines_cython[i],
length_streamline_python)
length_streamlines_cython = ds_length(streamlines_64bit)
for i, s in enumerate(streamlines_64bit):
length_streamline_python = length_python(s)
assert_array_almost_equal(length_streamlines_cython[i],
length_streamline_python)
# Test streamlines having mixed dtype
streamlines_mixed_dtype = [streamline,
streamline.astype(np.float64),
streamline.astype(np.int32),
streamline.astype(np.int64)]
lengths_mixed_dtype = [ds_length(s)
for s in streamlines_mixed_dtype]
assert_array_equal(ds_length(streamlines_mixed_dtype),
lengths_mixed_dtype)
# Test streamlines with different shape
length_streamlines_cython = ds_length(
heterogeneous_streamlines)
for i, s in enumerate(heterogeneous_streamlines):
length_streamline_python = length_python(s)
assert_array_almost_equal(length_streamlines_cython[i],
length_streamline_python)
# Test streamline having integer dtype
length_streamline = ds_length(streamline.astype('int'))
assert_true(length_streamline.dtype == np.float64)
# Test empty list
assert_equal(ds_length([]), 0.0)
# Test streamline having only one point
assert_equal(ds_length(np.array([[1, 2, 3]])), 0.0)
# We do not support list of lists, it should be numpy ndarray.
streamline_unsupported = [[1, 2, 3], [4, 5, 5], [2, 1, 3], [4, 2, 1]]
assert_raises(AttributeError, ds_length,
streamline_unsupported)
# Test setting computing length of a numpy with flag WRITABLE=False
streamlines_readonly = []
for s in streamlines:
streamlines_readonly.append(s.copy())
streamlines_readonly[-1].setflags(write=False)
assert_array_almost_equal(ds_length(streamlines_readonly),
[length_python(s) for s in streamlines_readonly])
streamlines_readonly = []
for s in streamlines_64bit:
streamlines_readonly.append(s.copy())
streamlines_readonly[-1].setflags(write=False)
assert_array_almost_equal(ds_length(streamlines_readonly),
[length_python(s) for s in streamlines_readonly])
def test_length():
# Test length of only one streamline
length_streamline_cython = ds_length(streamline)
length_streamline_python = length_python(streamline)
assert_almost_equal(length_streamline_cython, length_streamline_python)
length_streamline_cython = ds_length(streamline_64bit)
length_streamline_python = length_python(streamline_64bit)
assert_almost_equal(length_streamline_cython, length_streamline_python)
# Test computing length of multiple streamlines of different nb_points
length_streamlines_cython = ds_length(streamlines)
for i, s in enumerate(streamlines):
length_streamline_python = length_python(s)
assert_array_almost_equal(length_streamlines_cython[i],
length_streamline_python)
length_streamlines_cython = ds_length(streamlines_64bit)
for i, s in enumerate(streamlines_64bit):
length_streamline_python = length_python(s)
assert_array_almost_equal(length_streamlines_cython[i],
length_streamline_python)
# Test streamlines having mixed dtype
streamlines_mixed_dtype = [
streamline,
streamline.astype(np.float64),
streamline.astype(np.int32),
streamline.astype(np.int64)
]
lengths_mixed_dtype = [ds_length(s) for s in streamlines_mixed_dtype]
assert_array_equal(ds_length(streamlines_mixed_dtype), lengths_mixed_dtype)
# Test streamlines with different shape
length_streamlines_cython = ds_length(heterogeneous_streamlines)
for i, s in enumerate(heterogeneous_streamlines):
length_streamline_python = length_python(s)
assert_array_almost_equal(length_streamlines_cython[i],
length_streamline_python)
# Test streamline having integer dtype
length_streamline = ds_length(streamline.astype('int'))
assert_true(length_streamline.dtype == np.float64)
# Test empty list
assert_equal(ds_length([]), 0.0)
# Test streamline having only one point
assert_equal(ds_length(np.array([[1, 2, 3]])), 0.0)
# We do not support list of lists, it should be numpy ndarray.
streamline_unsupported = [[1, 2, 3], [4, 5, 5], [2, 1, 3], [4, 2, 1]]
assert_raises(AttributeError, ds_length, streamline_unsupported)
# Test setting computing length of a numpy with flag WRITABLE=False
streamlines_readonly = []
for s in streamlines:
streamlines_readonly.append(s.copy())
streamlines_readonly[-1].setflags(write=False)
assert_array_almost_equal(ds_length(streamlines_readonly),
[length_python(s) for s in streamlines_readonly])
streamlines_readonly = []
for s in streamlines_64bit:
streamlines_readonly.append(s.copy())
streamlines_readonly[-1].setflags(write=False)
assert_array_almost_equal(ds_length(streamlines_readonly),
[length_python(s) for s in streamlines_readonly])