def test_cluster_distances(self):
""" Test functionality of cluster_distances()
"""
species_set_dict = {
'IIIIIIII': 100,
'IIOOOIII': 50,
'IIIIIII0': 10,
'OIOIIIII': 5,
'IIIOOIII': 8,
'OOOOOIOO': 12
}
gene_clusters_list_exp = [
('IIIIIIII', ['IIIIIIII', 'IIIIIII0', 'IIIOOIII', 'OIOIIIII']),
('IIOOOIII', ['IIOOOIII', 'OOOOOIOO'])
]
gene_clusters_list_act = cluster_distances(
species_set_dict=species_set_dict,
species_set_size=30,
hamming_distance=2)
self.assertTrue(len(gene_clusters_list_exp),
len(gene_clusters_list_act))
for core_cluster_exp in gene_clusters_list_exp:
self.assertTrue(core_cluster_exp in gene_clusters_list_act)
for core_cluster_act in gene_clusters_list_act:
self.assertTrue(core_cluster_act in gene_clusters_list_exp)
def test_cluster_distances(self):
""" Test functionality of cluster_distances()
"""
species_set_dict = {'IIIIIIII': 100, 'IIOOOIII': 50, 'IIIIIII0': 10,
'OIOIIIII': 5, 'IIIOOIII': 8, 'OOOOOIOO': 12}
gene_clusters_dict_exp = {'IIIIIIII': ['IIIIIIII', 'IIIIIII0',
'IIIOOIII', 'OIOIIIII'],
'IIOOOIII': ['IIOOOIII', 'OOOOOIOO']}
gene_clusters_dict = cluster_distances(
species_set_dict=species_set_dict, species_set_size=30,
hamming_distance=2)
self.assertDictEqual(gene_clusters_dict, gene_clusters_dict_exp)
def test_cluster_distances(self):
""" Test functionality of cluster_distances()
"""
species_set_dict = {'IIIIIIII': 100, 'IIOOOIII': 50, 'IIIIIII0': 10,
'OIOIIIII': 5, 'IIIOOIII': 8, 'OOOOOIOO': 12}
gene_clusters_list_exp = [('IIIIIIII', ['IIIIIIII', 'IIIIIII0',
'IIIOOIII', 'OIOIIIII']),
('IIOOOIII', ['IIOOOIII', 'OOOOOIOO'])]
gene_clusters_list_act = cluster_distances(
species_set_dict=species_set_dict, species_set_size=30,
hamming_distance=2)
self.assertTrue(len(gene_clusters_list_exp),
len(gene_clusters_list_act))
for core_cluster_exp in gene_clusters_list_exp:
self.assertTrue(core_cluster_exp in gene_clusters_list_act)
for core_cluster_act in gene_clusters_list_act:
self.assertTrue(core_cluster_act in gene_clusters_list_exp)
