def upload_from_irods(username, password, host, port, zone, irods_fnames, res_files):
"""
use iget to transfer selected data object from irods zone to local as a NamedTemporaryFile
:param username: iRODS login account username used to download irods data object for uploading
:param password: iRODS login account password used to download irods data object for uploading
:param host: iRODS login host used to download irods data object for uploading
:param port: iRODS login port used to download irods data object for uploading
:param zone: iRODS login zone used to download irods data object for uploading
:param irods_fnames: the data object file name to download to local for uploading
:param res_files: list of files for uploading to create resources
:raises SessionException(proc.returncode, stdout, stderr) defined in django_irods/icommands.py
to capture iRODS exceptions raised from iRODS icommand subprocess run triggered from
any method calls from IrodsStorage() if an error or exception ever occurs
:return: None, but the downloaded file from the iRODS will be appended to res_files list for
uploading
"""
irods_storage = IrodsStorage()
irods_storage.set_user_session(username=username, password=password, host=host, port=port,
zone=zone)
ifnames = string.split(irods_fnames, ',')
for ifname in ifnames:
size = irods_storage.size(ifname)
tmpFile = irods_storage.download(ifname)
fname = os.path.basename(ifname.rstrip(os.sep))
fileobj = File(file=tmpFile, name=fname)
fileobj.size = size
res_files.append(fileobj)
# delete the user session after iRODS file operations are done
irods_storage.delete_user_session()
def upload_from_irods(username, password, host, port, zone, irods_fname, res_files):
try:
irods_storage = IrodsStorage()
irods_storage.set_user_session(username=username, password=password, host=host, port=port, zone=zone)
tmpFile = irods_storage.download(irods_fname)
fname = os.path.basename(irods_fname.rstrip(os.sep))
res_files.append(UploadedFile(file=tmpFile, name=fname))
except Exception as ex:
raise iRODSException(ex.message)
def verify_user_quota_usage_avu_in_user_zone(self, attname, qsize):
'''
Have to use HS_USER_ZONE_PROXY_USER with rodsadmin role to get user type AVU in user zone
and verify its quota usage is set correctly
:param attname: quota usage attribute name set on iRODS proxy user in user zone
:param qsize: quota size (type string) to be verified to equal to the value set for attname.
'''
istorage = IrodsStorage()
istorage.set_user_session(username=settings.HS_USER_ZONE_PROXY_USER,
password=settings.HS_USER_ZONE_PROXY_USER_PWD,
host=settings.HS_USER_ZONE_HOST,
port=settings.IRODS_PORT,
zone=settings.HS_USER_IRODS_ZONE,
sess_id='user_proxy_session')
uz_bagit_path = os.path.join('/', settings.HS_USER_IRODS_ZONE, 'home',
settings.HS_LOCAL_PROXY_USER_IN_FED_ZONE,
settings.IRODS_BAGIT_PATH)
get_qsize = istorage.getAVU(uz_bagit_path, attname)
self.assertEqual(qsize, get_qsize)
def verify_user_quota_usage_avu_in_user_zone(self, attname, qsize):
'''
Have to use LINUX_ADMIN_USER_FOR_HS_USER_ZONE with rodsadmin role to get user type AVU
in user zone and verify its quota usage is set correctly
:param attname: quota usage attribute name set on iRODS proxy user in user zone
:param qsize: quota size (type string) to be verified to equal to the value set for attname.
'''
istorage = IrodsStorage()
istorage.set_user_session(username=settings.LINUX_ADMIN_USER_FOR_HS_USER_ZONE,
password=settings.LINUX_ADMIN_USER_PWD_FOR_HS_USER_ZONE,
host=settings.HS_USER_ZONE_HOST,
port=settings.IRODS_PORT,
zone=settings.HS_USER_IRODS_ZONE,
sess_id='user_proxy_session')
uz_bagit_path = os.path.join('/', settings.HS_USER_IRODS_ZONE, 'home',
settings.HS_IRODS_PROXY_USER_IN_USER_ZONE,
settings.IRODS_BAGIT_PATH)
get_qsize = istorage.getAVU(uz_bagit_path, attname)
self.assertEqual(qsize, get_qsize)
def get_size_and_avu_for_irods_ref_files(username, password, host, port, zone,
irods_fnames):
"""
use iget to transfer selected data object from irods zone to local as a NamedTemporaryFile
:param username: iRODS login account username used to download irods data object for uploading
:param password: iRODS login account password used to download irods data object for uploading
:param host: iRODS login host used to download irods data object for uploading
:param port: iRODS login port used to download irods data object for uploading
:param zone: iRODS login zone used to download irods data object for uploading
:param irods_fnames: the data object file name to download to local for uploading
:raises SessionException(proc.returncode, stdout, stderr) defined in django_irods/icommands.py
to capture iRODS exceptions raised from iRODS icommand subprocess run triggered from
any method calls from IrodsStorage() if an error or exception ever occurs
:return: list of file sizes corresponding to irods_fnames, and extra metadata dicts with each dict item
corresponding to iRODS AVUs on the file or data object with file name preappended to attributes
"""
irods_storage = IrodsStorage()
irods_storage.set_user_session(username=username,
password=password,
host=host,
port=port,
zone=zone)
ifnames = string.split(irods_fnames, ',')
ifsizes = []
ifextra_mds = {}
for ifname in ifnames:
size = irods_storage.size(ifname)
ifsizes.append(size)
extra_md_dict = irods_storage.getAVU(ifname, type='-d')
for key, val in extra_md_dict.iteritems():
ukey = ifname + '_' + key
ifextra_mds[ukey] = val
# delete the user session after iRODS file operations are done
irods_storage.delete_user_session()
return ifsizes, ifextra_mds