def test_convert_with_profile():
cfgpath = setup_config(pxsize=1.34e-6,
medium_index=1.346,
wavelength=554.2e-9)
_, path_in, path_out = setup_test_data()
argsadd = argparse.Namespace(subparser_name="add",
name="test_8440_prof_convert",
path=cfgpath)
profile.cli_profile(args=argsadd)
try:
# perform conversion
h5data = cli_convert(path=path_in,
ret_data=True,
profile="test_8440_prof_convert")
cfg = config.ConfigFile(path_out)
assert np.allclose(cfg["meta"]["medium index"], 1.346)
assert np.allclose(cfg["meta"]["pixel size um"], 1.34)
assert np.allclose(cfg["meta"]["wavelength nm"], 554.2)
with qpimage.QPSeries(h5file=h5data, h5mode="r") as qps:
assert np.allclose(qps[0]["medium index"], 1.346)
assert np.allclose(qps[0]["pixel size"], 1.34e-6)
assert np.allclose(qps[0]["wavelength"], 554.2e-9)
except BaseException:
raise
finally:
# cleanup
argsrem = argparse.Namespace(subparser_name="remove",
name="test_8440_prof_convert")
profile.cli_profile(args=argsrem)
def test_list_none(capsys):
if profile.get_profiles():
warnings.warn("Test cannot succeed, b/c there are user profiles.")
else:
argslist = argparse.Namespace(subparser_name="list")
profile.cli_profile(args=argslist)
captured = capsys.readouterr()
assert "No profiles in local library." in captured.out.strip()
def test_remove_fail():
argsrem = argparse.Namespace(subparser_name="remove",
name="test_8474_prof")
try:
profile.cli_profile(args=argsrem)
except OSError:
pass
else:
assert False
def test_add_remove():
path = setup_config()
argsadd = argparse.Namespace(subparser_name="add",
name="test_8472_prof",
path=path)
profile.cli_profile(args=argsadd)
# verify that the profile was imported
pps = profile.get_profile_path(name="test_8472_prof")
assert pps.exists()
# remove the profile again
argsrem = argparse.Namespace(subparser_name="remove",
name="test_8472_prof")
profile.cli_profile(args=argsrem)
assert not pps.exists()
def test_list_profile(capsys):
path = setup_config()
argsadd = argparse.Namespace(subparser_name="add",
name="test_8490_prof",
path=path)
profile.cli_profile(args=argsadd)
argslist = argparse.Namespace(subparser_name="list")
profile.cli_profile(args=argslist)
captured = capsys.readouterr()
assert "- test_8490_prof:" in captured.out.strip()
argsrem = argparse.Namespace(subparser_name="remove",
name="test_8490_prof")
profile.cli_profile(args=argsrem)
def test_export():
path = setup_config()
argsadd = argparse.Namespace(subparser_name="add",
name="test_8491_prof",
path=path)
profile.cli_profile(args=argsadd)
# export
tdir = tempfile.mkdtemp(prefix="test_drymass_profile_export_")
argsexp = argparse.Namespace(subparser_name="export", path=tdir)
profile.cli_profile(args=argsexp)
assert (pathlib.Path(tdir) / "profile_test_8491_prof.cfg").exists()
# cleanup
argsrem = argparse.Namespace(subparser_name="remove",
name="test_8491_prof")
profile.cli_profile(args=argsrem)
def test_add_fail():
path = setup_config()
argsadd = argparse.Namespace(subparser_name="add",
name="test_8473_prof",
path=path)
profile.cli_profile(args=argsadd)
try:
profile.cli_profile(args=argsadd)
except OSError:
pass
else:
assert False
# remove the profile again
argsrem = argparse.Namespace(subparser_name="remove",
name="test_8473_prof")
profile.cli_profile(args=argsrem)