Esempio n. 1
0
import sys, os
import json
import argparse
import re
from collections import OrderedDict
import dxpy
from dxpy.templating.utils import (print_intro, get_name, get_version, get_metadata, Completer, get_ordinal_str,
                                   prompt_for_var, prompt_for_yn, use_completer, get_language, language_options,
                                   get_pattern, get_timeout, fill_in_name_and_ver, clean, create_files_from_templates)
from dxpy.utils.printing import fill, BOLD, UNDERLINE, DNANEXUS_LOGO, ENDC
from dxpy.app_categories import APP_CATEGORIES
from dxpy.utils.completer import InstanceTypesCompleter
from dxpy.utils.pretty_print import format_table
from dxpy.compat import wrap_stdio_in_codecs
wrap_stdio_in_codecs()

try:
    import colorama
    colorama.init()
except:
    pass

IO_NAME_PATTERN = re.compile('^[a-zA-Z_][0-9a-zA-Z_]*$')

API_VERSION = '1.0.0'

parser = argparse.ArgumentParser(description="Create a source code directory for a DNAnexus app.  You will be prompted for various metadata for the app as well as for its input and output specifications.")
parser.add_argument('--json-file', help='Use the metadata and IO spec found in the given file')
parser.add_argument('--language', help='Programming language of your app')
parser.add_argument('--template',
Esempio n. 2
0
import sys, os
import json
import argparse
import re
from collections import OrderedDict
import dxpy
from dxpy.templating.utils import (print_intro, get_name, get_version, get_metadata, Completer, get_ordinal_str,
                                   prompt_for_var, prompt_for_yn, use_completer, get_language, language_options,
                                   get_pattern, get_timeout, fill_in_name_and_ver, clean, create_files_from_templates)
from dxpy.utils.printing import fill, BOLD, UNDERLINE, DNANEXUS_LOGO, ENDC
from dxpy.app_categories import APP_CATEGORIES
from dxpy.utils.completer import InstanceTypesCompleter
from dxpy.utils.pretty_print import format_table
from dxpy.compat import wrap_stdio_in_codecs
wrap_stdio_in_codecs()

try:
    import colorama
    colorama.init()
except:
    pass

IO_NAME_PATTERN = re.compile('^[a-zA-Z_][0-9a-zA-Z_]*$')
DEFAULT_REGION_AWS = 'aws:us-east-1'
DEFAULT_REGION_AZURE = 'azure:westus'
API_VERSION = '1.0.0'

parser = argparse.ArgumentParser(description="Create a source code directory for a DNAnexus app.  You will be prompted for various metadata for the app as well as for its input and output specifications.")
parser.add_argument('--json-file', help='Use the metadata and IO spec found in the given file')
parser.add_argument('--language', help='Programming language of your app')