def sanitycheck(self):
"""
Custom sanity check for HDF5
"""
if not self.getcfg('sanityCheckPaths'):
if self.toolkit().opts['usempi']:
extra_binaries = ["bin/%s" % x for x in ["h5perf", "h5pcc", "h5pfc", "ph5diff"]]
else:
extra_binaries = ["bin/%s" % x for x in ["h5cc", "h5fc"]]
self.setcfg('sanityCheckPaths',{
'files': ["bin/h5%s" % x for x in ["2gif", "c++", "copy",
"debug", "diff", "dump",
"import", "jam","ls",
"mkgrp", "perf_serial",
"redeploy", "repack",
"repart", "stat", "unjam"]] +
["bin/gif2h5"] + extra_binaries +
["lib/libhdf5%s.so" % x for x in ["_cpp", "_fortran",
"_hl_cpp", "_hl",
"hl_fortran", ""]],
'dirs': ['include']
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for g2clib."""
if not self.getcfg("sanityCheckPaths"):
self.setcfg("sanityCheckPaths", {"files": ["lib/libgrib2c.a"], "dirs": ["include"]})
Application.sanitycheck(self)
def sanitycheck(self):
"""
Custom sanity check for netCDF
"""
if not self.getcfg('sanityCheckPaths'):
incs = ["netcdf.h"]
libs = ["libnetcdf.so", "libnetcdf.a"]
# since v4.2, the non-C libraries have been split off in seperate packages
# see netCDF-Fortran and netCDF-C++
if LooseVersion(self.version()) < LooseVersion("4.2"):
incs += ["netcdf%s" % x for x in ["cpp.h", ".hh", ".inc", ".mod"]] + \
["ncvalues.h", "typesizes.mod"]
libs += ["libnetcdf_c++.so", "libnetcdff.so",
"libnetcdf_c++.a", "libnetcdff.a"]
self.setcfg('sanityCheckPaths',{
'files': ["bin/nc%s" % x for x in ["-config", "copy", "dump",
"gen", "gen3"]] +
["lib/%s" % x for x in libs] +
["include/%s" % x for x in incs],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for OpenFOAM"""
if not self.getcfg('sanityCheckPaths'):
odir = "%s-%s" % (self.name(), self.version())
psubdir = "linux64%sDPOpt" % self.wm_compiler
if LooseVersion(self.version()) < LooseVersion("2"):
toolsdir = os.path.join(odir, "applications", "bin", psubdir)
else:
toolsdir = os.path.join(odir, "platforms", psubdir, "bin")
pdirs = []
if LooseVersion(self.version()) >= LooseVersion("2"):
pdirs = [toolsdir, os.path.join(odir, "platforms", psubdir, "lib")]
# some randomly selected binaries
# if one of these is missing, it's very likely something went wrong
bins = [os.path.join(odir, "bin", x) for x in []] + \
[os.path.join(toolsdir, "buoyant%sSimpleFoam" % x) for x in ["", "Boussinesq"]] + \
[os.path.join(toolsdir, "%sFoam" % x) for x in ["bubble", "engine", "sonic"]] + \
[os.path.join(toolsdir, "surface%s" % x) for x in ["Add", "Find", "Smooth"]] + \
[os.path.join(toolsdir, x) for x in ["deformedGeom", "engineSwirl", "modifyMesh", "refineMesh", "vorticity"]]
self.setcfg('sanityCheckPaths',{'files':["%s/etc/%s" % (odir, x) for x in ["bashrc", "cshrc"]] + bins,
'dirs':pdirs
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for g2lib."""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths', {
'files': ["lib/libg2.a"],
'dirs': []
})
Application.sanitycheck(self)
def sanitycheck(self):
"""
Custom sanity check for HPL
"""
if not self.getcfg("sanityCheckPaths"):
self.setcfg("sanityCheckPaths", {"files": ["bin/xhpl"], "dirs": []})
self.log.info("Customized sanity check paths: %s" % self.getcfg("sanityCheckPaths"))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for FSL"""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths', {'files':[],
'dirs':["fsl/%s" % x for x in ["bin", "data", "etc", "extras", "include", "lib"]]
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for ScaLAPACK."""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths',{
'files': ["lib/libscalapack.a"],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for libsmm"""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths', {
'files': ["lib/libsmm_%s.a" % x for x in ["dnn", "znn"]],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for MrBayes."""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths', {
'files': ["bin/mb"],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for WPS."""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths', {
'files': ["WPS/%s" % x for x in ["geogrid.exe", "metgrid.exe",
"ungrib.exe"]],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""
Custom sanity check for LAPACK (only run when not testing)
"""
if not self.getcfg('test_only'):
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths',{
'files': ["lib/%s" % x for x in ["liblapack.a", "libtmglib.a"]],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for BLACS."""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths',{
'files': [fil for filptrn in ["blacs", "blacsCinit", "blacsF77init"]
for fil in ["lib/lib%s.a" % filptrn,
"lib/%s_MPI-LINUX-0.a" % filptrn]] +
["bin/xintface"],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for CP2K"""
if not self.getcfg('sanityCheckPaths'):
cp2k_type = self.getcfg('type')
self.setcfg('sanityCheckPaths',{
'files': ["bin/%s.%s" % (x, cp2k_type) for x in ["cp2k",
"cp2k_shell",
"fes"]],
'dirs': ["tests"]
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""
Custom sanity check for netCDF-Fortran
"""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths',{
'files': ["bin/nf-config"] +
["lib/%s" % x for x in ["libnetcdff.so", "libnetcdff.a"]] +
["include/%s" % x for x in ["netcdf.inc", "netcdf.mod",
"typesizes.mod"]],
'dirs': []
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""
Custom sanity check for MVAPICH2
"""
if not self.getcfg('sanityCheckPaths'):
self.setcfg('sanityCheckPaths',{
'files': ["bin/%s" % x for x in ["mpicc", "mpicxx", "mpif77",
"mpif90", "mpiexec.hydra"]] +
["lib/lib%s" % y for x in ["fmpich", "mpichcxx", "mpichf90",
"mpich", "mpl", "opa"]
for y in ["%s.so"%x, "%s.a"%x]],
'dirs': ["include"]
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""Custom sanity check for WRF."""
if not self.getcfg('sanityCheckPaths'):
mainver = self.version().split('.')[0]
self.wrfsubdir = "WRFV%s"%mainver
fs = ["libwrflib.a", "wrf.exe", "ideal.exe", "real.exe", "ndown.exe", "nup.exe", "tc.exe"]
ds = ["main", "run"]
self.setcfg('sanityCheckPaths',{
'files': [os.path.join(self.wrfsubdir, "main", x) for x in fs],
'dirs': [os.path.join(self.wrfsubdir, x) for x in ds]
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
def sanitycheck(self):
"""
Custom sanity check for ATLAS
"""
if not self.getcfg('sanityCheckPaths'):
libs = ["atlas", "cblas", "f77blas", "lapack", "ptcblas", "ptf77blas"]
static_libs = ["lib/lib%s.a" % x for x in libs]
if self.getcfg('sharedlibs'):
shared_libs = ["lib/lib%s.so" % x for x in libs]
else:
shared_libs = []
self.setcfg('sanityCheckPaths', {
'files': ["include/%s" % x for x in ["cblas.h", "clapack.h"]] +
static_libs + shared_libs,
'dirs': ["include/atlas"]
})
self.log.info("Customized sanity check paths: %s" % self.getcfg('sanityCheckPaths'))
Application.sanitycheck(self)
