def setUp(self):
from bhp066.apps.bcpp.app_configuration.classes import BcppAppConfiguration
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(survey_name='BCPP Year 2') # see app_configuration
plot = PlotFactory(community='digawana', household_count=1, status='residential_habitable')
household = Household.objects.get(plot=plot)
self.household_structure = HouseholdStructure.objects.get(household=household, survey=self.survey1)
self.representative_eligibility = RepresentativeEligibilityFactory(household_structure=self.household_structure)
self.study_site = StudySite.objects.get(site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_registry(settings.CURRENT_COMMUNITY)().intervention
def setUp(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
MaternalConsent.objects.all().delete()
self.maternal_consent1 = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent1)
self.registered_subject1 = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent1.subject_identifier)
self.post_elibility1 = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent1,
registered_subject=self.registered_subject1)
self.maternal_consent2 = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent2)
self.registered_subject2 = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent2.subject_identifier)
self.post_elibility2 = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent2,
registered_subject=self.registered_subject2)
self.maternal_consent3 = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent3)
self.registered_subject3 = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent3.subject_identifier)
self.post_elibility3 = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent3,
registered_subject=self.registered_subject3)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
def setUp(self):
try:
site_lab_profiles.register(ClinicSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
site_mappers.autodiscover()
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppClinicVisitSchedule().build()
def startup(self):
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
TestAppConfiguration()
site_lab_tracker.autodiscover()
TestVisitSchedule().build()
self.study_site = StudySite.objects.all()[0]
def setUp(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
def startup(self):
from bhp066.apps.bcpp.app_configuration.classes import BcppAppConfiguration
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
site_mappers.autodiscover()
BcppAppConfiguration.confirm_site_code_in_settings = False
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.mapper = site_mappers.get_current_mapper()
# self.app_config.prep_survey_for_tests()
self.community = 'test_community'
plot = PlotFactory(community=self.community, household_count=1, status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure = HouseholdStructure.objects.get(household__plot=plot, survey=survey)
RepresentativeEligibilityFactory(household_structure=self.household_structure)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure, gender='M',
age_in_years=self.male_age_in_years, first_name=self.male_first_name,
initials=self.male_initials
)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes'
)
self.subject_consent_male = SubjectConsentFactory(household_member=self.household_member_male_T0, study_site=self.study_site, gender='M', dob=self.male_dob, first_name=self.male_first_name, initials=self.male_initials)
self.registered_subject_male = RegisteredSubject.objects.get(subject_identifier=self.subject_consent_male.subject_identifier)
self.appointment_male_T0 = Appointment.objects.get(registered_subject=self.registered_subject_male, visit_definition__code='T0')
self.subject_visit_male_T0 = SubjectVisitFactory(appointment=self.appointment_male_T0, household_member=self.household_member_male_T0)
SubjectLocatorFactory(registered_subject=self.subject_visit_male_T0.appointment.registered_subject, subject_visit=self.subject_visit_male_T0)
self.household_member_T1 = None
self.update_call_list_class = UpdateCallList()
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
self.community = site_mappers.get_current_mapper().map_area
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.site_code = self.study_site
self.intervention = site_mappers.get_current_mapper().intervention
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
self.survey2 = Survey.objects.get(
survey_name='BCPP Year 2') # see app_configuration
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.create_baseline(household)
self.data = {
'household_member': self.household_member_male.id,
'report_datetime': datetime.today(),
'first_name': 'SETS',
'initials': 'SA',
'dob': datetime.today() + relativedelta(years=-20),
'guardian': NO,
'gender': MALE,
'has_identity': YES,
'identity': '317918515',
'identity_type': 'OMANG',
'citizen': YES,
'part_time_resident': YES,
'literacy': YES,
'guardian': YES,
'inability_to_participate': 'N/A',
'hiv_status': 'NEG',
'legal_marriage': 'N/A',
'marriage_certificate': 'N/A'
}
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
def setUp(self):
try:
site_lab_profiles.register(HnsccSubjectProfile())
except AlreadyRegistered:
pass
HnsccAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
print "assert appointment is created for enrolled subject"
self.enrolled_subject = EnrolledSubjectFactory()
self.appointment = Appointment.objects.get(registered_subject=self.enrolled_subject.registered_subject)
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
delivery_days_ago = 20
self.delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print "Consent: {}".format(self.maternal_consent)
m_registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print 'check if mother is eligible'
self.maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=m_registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'get the 2000M visit'
self.m_appointment = Appointment.objects.get(
registered_subject=m_registered_subject,
visit_definition__code='2000M')
print 'create a maternal visit for the 2000M visit'
self.maternal_visit = MaternalVisitFactory(
appointment=self.m_appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=self.maternal_visit,
live_infants=1,
live_infants_to_register=1,
delivery_datetime=self.delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(self.maternal_lab_del)
def setUp(self):
# content_type_map_helper = ContentTypeMapHelper()
# content_type_map_helper.populate()
# content_type_map_helper.sync()
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
TestAppConfiguration()
self.test_visit_schedule = TestVisitSchedule()
self.test_visit_schedule.build()
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
def setUp(self):
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
TestAppConfiguration()
site_lab_tracker.autodiscover()
TestVisitSchedule().build()
class TestRuleGroupConsent(RuleGroup):
test_rule = RequisitionRule(
logic=Logic(
predicate=(('may_store_samples', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testrequisition'],
target_requisition_panels=['research blood draw'])
class Meta:
app_label = 'testing'
source_fk = (RegisteredSubject, 'registered_subject')
source_model = TestConsentWithMixin
site_rule_groups.register(TestRuleGroupConsent)
class TestRuleGroupSched(RuleGroup):
test_rule = RequisitionRule(
logic=Logic(
predicate=(('f1', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testrequisition'],
target_requisition_panels=['microtube', 'viral load'])
class Meta:
app_label = 'testing'
source_fk = (TestVisit, 'test_visit')
source_model = TestScheduledModel1
site_rule_groups.register(TestRuleGroupSched)
self.test_rule_group_sched_cls = TestRuleGroupSched
self.test_visit_factory = TestVisitFactory
self.visit_definition = VisitDefinition.objects.get(code='1000')
self.test_consent = TestConsentWithMixinFactory(gender='M', study_site=StudySite.objects.all()[0], may_store_samples=YES)
self.registered_subject = RegisteredSubject.objects.get(subject_identifier=self.test_consent.subject_identifier)
self.appointment = Appointment.objects.get(registered_subject=self.registered_subject)
def setUp(self):
self.test_visit_factory = TestVisitFactory
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
TestAppConfiguration()
site_lab_tracker.autodiscover()
TestVisitSchedule().rebuild()
study_site = StudySite.objects.all()[0]
subject_consent = TestConsentWithMixinFactory(study_site=study_site)
self.registered_subject = RegisteredSubject.objects.get(subject_identifier=subject_consent.subject_identifier)
self.consent = TestConsentWithMixin.objects.get(registered_subject=self.registered_subject)
appointment = Appointment.objects.get(registered_subject=self.registered_subject)
self.test_visit = TestVisitFactory(appointment=appointment)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
plot = PlotFactory(community='test_community3',
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey1)
def setUp(self):
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
site_lab_tracker.autodiscover()
TestAppConfiguration()
TestVisitSchedule().rebuild()
self.test_visit_factory = TestVisitFactory
self.study_site = StudySite.objects.all()[0]
self.visit_definition = VisitDefinition.objects.get(code='1000')
self.test_consent = TestConsentWithMixinFactory(gender='M', study_site=self.study_site)
self.registered_subject = RegisteredSubject.objects.get(subject_identifier=self.test_consent.subject_identifier)
self.appointment_count = VisitDefinition.objects.all().count()
self.appointment = Appointment.objects.get(registered_subject=self.registered_subject, visit_definition__code='1000')
def startup(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
# site_visit_schedules.autodiscover()
# site_visit_schedules.build_all()
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
# try:
# site_lab_profiles.register(BcppSubjectProfile())
# except AlreadyRegisteredLabProfile:
# pass
# BcppAppConfiguration()
# site_lab_tracker.autodiscover()
# BcppSubjectVisitSchedule().build()
self.community = site_mappers.get_current_mapper().map_area
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.site_code = self.study_site
self.intervention = site_mappers.get_current_mapper().intervention
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
self.survey2 = Survey.objects.get(
survey_name='BCPP Year 2') # see app_configuration
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.create_baseline(household)
self.create_annual(household)
def setUp(self):
from bhp066.apps.bcpp.app_configuration.classes import BcppAppConfiguration
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
site_mappers.autodiscover()
# set current community manually (not from settings)
site_mappers.current_community = 'test_community'
BcppAppConfiguration.study_start_datetime = datetime.today(
) + relativedelta(days=-2)
BcppAppConfiguration.study_end_datetime = datetime.today(
) + relativedelta(days=45)
bcpp_app_configuration = BcppAppConfiguration()
# bypass any check of site_code and community against settings
bcpp_app_configuration.confirm_site_code_in_settings = False
bcpp_app_configuration.confirm_community_in_settings = False
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
plot = PlotFactory(community='test_community',
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey1)
self.representative_eligibility = RepresentativeEligibilityFactory(
household_structure=self.household_structure)
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
def setUp(self):
self.household_member = None
self.subject_consent = None
self.registered_subject = None
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.survey = Survey.objects.current_survey()
self.plot = PlotFactory(community='oodi', household_count=1, status='bcpp_clinic')
self.household = HouseholdFactory(plot=self.plot)
self.household_structure = HouseholdStructure.objects.get(household=self.household, survey=self.survey)
self.study_site = StudySite.objects.get(site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
site_mappers.get_current_mapper().verify_survey_dates()
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(survey_name='BCPP Year 1') # see app_configuration
site_mappers.autodiscover()
mapper = site_mappers.get(site_mappers.get_as_list()[0])
self.community = mapper().get_map_area()
gps_degrees_s, gps_minutes_s, gps_degrees_e, gps_minutes_e = mapper().test_location
self.plot = PlotFactory(community=self.community,
gps_degrees_s=gps_degrees_s,
gps_minutes_s=gps_minutes_s,
gps_degrees_e=gps_degrees_e,
gps_minutes_e=gps_minutes_e,
household_count=2,
status='residential_habitable')
self.household1 = Household.objects.filter(plot=self.plot).order_by('created')[0]
self.household_structure1 = HouseholdStructure.objects.get(household=self.household1, survey=self.survey1)
self.household2 = Household.objects.filter(plot=self.plot).order_by('created')[1]
self.household_member1 = HouseholdMemberFactory(household_structure=self.household_structure1,
age_in_years=26,
present_today='Yes',
member_status='RESEARCH')
self.household_member2 = HouseholdMemberFactory(household_structure=self.household_structure1, age_in_years=36, present_today='Yes')
self.household_member3 = HouseholdMemberFactory(household_structure=self.household_structure1, age_in_years=12, present_today='Yes')
self.household_member4 = HouseholdMemberFactory(household_structure=self.household_structure1, age_in_years=99, present_today='Yes')
self.dashboard_type = 'household'
self.dashboard_model = 'household'
self.dashboard_id = self.household1.pk
self.household_member1.eligible_subject = True
self.subject_consent = SubjectConsentFactory(
household_member=self.household_member1,
first_name=self.household_member1.first_name,
initials=self.household_member1.initials,
registered_subject=self.household_member1.registered_subject)
def setUp(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
print "Consenting a mother"
MaternalConsent.objects.all().delete()
self.maternal_consent = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent)
print 'get maternal registered subject'
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print "check if mother is eligible"
self.post_elibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=self.maternal_consent.registered_subject)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.study_site = StudySite.objects.get(site_code='01')
self.survey = Survey.objects.all()[0]
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
next_survey = Survey.objects.all().order_by('datetime_start')[1]
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=next_survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
self.female_dob = date(1989, 10, 10)
self.female_age_in_years = relativedelta(date.today(),
self.female_dob).years
self.female_first_name = 'ERIKA'
self.female_last_name = 'WAXON'
self.female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=self.female_age_in_years,
first_name=self.female_first_name,
initials=self.female_initials)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.assertEqual(self.household_member_female_T0.member_status,
'BHS_SCREEN')
self.enrollment_checklist_female = EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=self.female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
self.subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=self.female_dob,
first_name=self.female_first_name,
last_name=self.female_last_name,
initials=self.female_initials)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_female.subject_identifier)
enumeration_helper = EnumerationHelper(
self.household_structure.household, survey, next_survey)
self.household_member_female = enumeration_helper.create_member_on_target(
self.household_member_female_T0)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.locator_female_T0 = SubjectLocatorFactory(
subject_visit=self.subject_visit_female_T0,
registered_subject=self.registered_subject_female)
self.residency_mobility_female_T0 = ResidencyMobilityFactory(
subject_visit=self.subject_visit_female_T0)
microtube_panel = Panel.objects.get(name='Microtube')
aliquot_type = AliquotType.objects.all()[0]
self.subject_requisition_T0 = SubjectRequisitionFactory(
subject_visit=self.subject_visit_female_T0,
panel=microtube_panel,
aliquot_type=aliquot_type)
self.hiv_result_today_T0 = HivResultFactory(
subject_visit=self.subject_visit_female_T0, hiv_result=NEG)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
mapper = site_mappers._registry_by_code.get('01')
mapper.survey_dates = {
'bcpp-year-1':
SurveyDatesTuple(name='bhs',
start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=-1) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=-1) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=89)),
'bcpp-year-2':
SurveyDatesTuple(name='t1',
start_date=date.today() + relativedelta(years=0) +
relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=0) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=0) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=0) + relativedelta(days=89)),
}
bcpp_app_configuration.survey_setup = {
'bcpp-year-1': {
'survey_name':
'BCPP Year 1',
'survey_slug':
'bcpp-year-1',
'datetime_start':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=30)
},
'bcpp-year-2': {
'survey_name': 'BCPP Year 2',
'survey_slug': 'bcpp-year-2',
'datetime_start': datetime.today() + relativedelta(days=-90),
'datetime_end': datetime.today() + relativedelta(days=90)
},
'bcpp-year-3': {
'survey_name':
'BCPP Year 3',
'survey_slug':
'bcpp-year-3',
'datetime_start':
datetime.today() + relativedelta(years=1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=1) +
relativedelta(days=30)
},
}
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.survey2 = Survey.objects.current_survey()
self.survey1 = Survey.objects.previous_survey()
plot = PlotFactory(community='test_community',
household_count=1,
status='residential_habitable')
self.household = Household.objects.get(plot=plot)
self.source_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey1)
self.target_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey2)
self.representative_eligibility = RepresentativeEligibilityFactory(
household_structure=self.source_household_structure)
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
# add members to source
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.data = {
'last_name':
'WIZZY',
'is_minor':
'No',
'witness_name':
None,
'is_literate':
'Yes',
'subject_type':
'subject',
'consent_copy':
'Yes',
'is_verified':
False,
'consent_signature':
None,
'first_name':
'ERIK',
'dm_comment':
None,
'is_dob_estimated':
None,
'verified_by':
None,
'user_modified':
u'',
'is_signed':
True,
'is_verified_datetime':
None,
'subject_identifier_aka':
None,
'version':
u'4',
'citizen':
'Yes',
'legal_marriage':
u'N/A',
'assessment_score':
'Yes',
'is_incarcerated':
'No',
'consent_reviewed':
'Yes',
'study_questions':
'Yes',
'sid':
None,
'study_site_id':
self.study_site.id,
'may_store_samples':
YES,
'consent_version_recent':
None,
'subject_identifier':
self.household_member_male_T0.registered_subject.
subject_identifier,
'subject_identifier_as_pk':
self.household_member_male_T0.registered_subject.id,
'community':
u'test_community',
'using':
'default',
'marriage_certificate_no':
None,
'identity':
'317918515',
'confirm_identity':
'317918515',
'registered_subject_id':
self.household_member_male_T0.registered_subject.id,
'identity_type':
'OMANG',
'language':
u'not specified',
'guardian_name':
None,
'gender':
'M',
'household_member':
self.household_member_male_T0.id,
'marriage_certificate':
u'N/A',
'dob':
self.male_dob,
'study_site':
self.study_site.id,
'initials':
'EW',
'language':
'en',
'is_dob_estimated':
'-',
'consent_signature':
YES,
'consent_datetime':
datetime.today(),
'version':
1
}
class BaseBcppProfile(LabProfile):
aliquot_model = Aliquot
aliquot_type_model = AliquotType
profile_model = AliquotProfile
profile_item_model = AliquotProfileItem
receive_model = Receive
panel_model = Panel
class BcppSubjectProfile(BaseBcppProfile):
requisition_model = SubjectRequisition
name = SubjectRequisition._meta.object_name
site_lab_profiles.register(BcppSubjectProfile)
class BaseClinicProfile(LabProfile):
aliquot_model = Aliquot
aliquot_type_model = AliquotType
profile_model = AliquotProfile
profile_item_model = AliquotProfileItem
receive_model = Receive
panel_model = Panel
class ClinicSubjectProfile(BaseClinicProfile):
requisition_model = ClinicRequisition
name = ClinicRequisition._meta.object_name
from edc.lab.lab_profile.classes import site_lab_profiles
from edc.lab.lab_profile.classes import LabProfile
from .models import (Aliquot, AliquotType, Receive, HnsccRequisition,
AliquotProfile, AliquotProfileItem, Panel)
class BaseHnsccProfile(LabProfile):
aliquot_model = Aliquot
aliquot_type_model = AliquotType
profile_model = AliquotProfile
profile_item_model = AliquotProfileItem
receive_model = Receive
panel_model = Panel
class HnsccSubjectProfile(BaseHnsccProfile):
requisition_model = HnsccRequisition
name = HnsccRequisition._meta.object_name
site_lab_profiles.register(HnsccSubjectProfile)
def test_p1(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
StudySpecificFactory()
study_site = StudySiteFactory()
MpepuAppConfiguration().prepare()
content_type_map_helper = ContentTypeMapHelper()
content_type_map_helper.populate()
content_type_map_helper.sync()
print 'setup the consent catalogue for app {0}'.format(self.app_label)
content_type_map = ContentTypeMap.objects.get(
content_type__model=self.subject_consent._meta.object_name.lower())
consent_catalogue = ConsentCatalogueFactory(
name=self.consent_catalogue_name,
content_type_map=content_type_map)
consent_catalogue.add_for_app = self.app_label
consent_catalogue.save()
print 'setup bhp_visit'
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalEligibilityAnte._meta.object_name.
lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Maternal Ante Natal Reg',
grouping_key='ELIGIBILITY')
visit_definition = VisitDefinitionFactory(
code='1000M',
title='Maternal Ante Natal Registration',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalEligibilityPost._meta.object_name.
lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Maternal Post Partum Reg',
grouping_key='ELIGIBILITY')
visit_definition = VisitDefinitionFactory(
code='2000M',
title='Maternal Post Natal Registration',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
content_type_map = ContentTypeMap.objects.get(
content_type__model=MaternalPostReg._meta.object_name.lower())
membership_form = MembershipFormFactory(
content_type_map=content_type_map)
schedule_group = ScheduleGroupFactory(
membership_form=membership_form,
group_name='Post Partum Follow-up')
visit_definition = VisitDefinitionFactory(code='2010M',
title='Infant Randomization',
grouping='maternal')
visit_definition.schedule_group.add(schedule_group)
print 'consent a mother (2 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=2))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'take mother off study (1 day ago)'
maternal_off_study = MaternalOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=1))
print 'Off study: {0}'.format(maternal_off_study)
print 'confirm cannot add a registration form today'
self.assertRaises(SubjectOffStudyError,
MaternalEligibilityAnteFactory,
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() -
timedelta(days=0))
print 'consent a mother (3 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=3))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'add a registration form 2 days ago'
maternal_eligibility = MaternalEligibilityAnteFactory(
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() - timedelta(days=2))
print 'confirm appointments'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
print 'Appointment {0} {1}'.format(appointment,
appointment.appt_datetime)
print 'take mother off study (1 day ago)'
maternal_off_study = MaternalOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=appointment.appt_datetime - timedelta(days=1))
print 'Off study: {0} offstudy_datetime={1}'.format(
maternal_off_study,
date.today() - timedelta(days=1))
print 'confirm appointments deleted'
self.assertEquals(
Appointment.objects.filter(registered_subject=registered_subject,
visit_definition__code='1000M').count(),
0)
print 'consent a mother (4 days ago)'
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() - timedelta(days=4))
print maternal_consent.subject_identifier
print 'get maternal registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
print 'add a registration form 3 days ago'
maternal_eligibility = MaternalEligibilityAnteFactory(
maternal_consent=maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() - timedelta(days=3))
print 'confirm appointments'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
print 'add a visit form 2 days ago'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='1000M')
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() - timedelta(days=2))
print 'confirm cannot take mother off study (3 day ago)'
self.assertRaises(SubjectOffStudyDateError,
MaternalOffStudyFactory,
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=3))
print 'confirm can take mother off study (2 day ago)'
maternal_off_study = MaternalOffStudyFactory(
registered_subject=registered_subject,
offstudy_date=date.today() - timedelta(days=2))
print 'Off study: {0}'.format(maternal_off_study)
print 'confirm appointments not deleted'
self.assertEquals(
Appointment.objects.filter(registered_subject=registered_subject,
visit_definition__code='1000M').count(),
1)
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
admin.autodiscover()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
self.delivery_days_ago = 20
self.delivery_datetime = datetime.today() - timedelta(
days=self.delivery_days_ago - 3)
print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print "Consent: {}".format(self.maternal_consent)
registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print 'check if mother is eligible'
maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print 'get the 2000M visit'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='2000M')
print 'create a maternal visit for the 2000M visit'
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=maternal_visit,
live_infants=2,
live_infants_to_register=2,
delivery_datetime=self.delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(self.maternal_lab_del)
print 'get registered subject of the first infant'
self.registered_subject1 = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[0]
print 'first registered subject {}'.format(self.registered_subject1)
self.infant_birth1 = InfantBirthFactory(
registered_subject=self.registered_subject1,
maternal_lab_del=self.maternal_lab_del,
dob=self.delivery_datetime.date())
print 'first infant birth {}'.format(self.infant_birth1)
appointment1 = Appointment.objects.get(
registered_subject=self.registered_subject1,
visit_definition__code='2000')
infant_visit1 = InfantVisitFactory(appointment=appointment1,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
print 'get registered subject of the second infant'
self.registered_subject2 = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[1]
print 'second registered subject {}'.format(self.registered_subject2)
self.infant_birth2 = InfantBirthFactory(
registered_subject=self.registered_subject2,
maternal_lab_del=self.maternal_lab_del,
dob=self.delivery_datetime.date())
print 'second infant birth {}'.format(self.infant_birth2)
appointment2 = Appointment.objects.get(
registered_subject=self.registered_subject2,
visit_definition__code='2000')
infant_visit2 = InfantVisitFactory(appointment=appointment2,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
from edc.lab.lab_profile.classes import site_lab_profiles
from edc.lab.lab_profile.classes import LabProfile
from .models import Aliquot, AliquotType, Receive, MaternalRequisition, InfantRequisition, AliquotProfile, AliquotProfileItem, Panel
class BaseMpepuProfile(LabProfile):
aliquot_model = Aliquot
aliquot_type_model = AliquotType
panel_model = Panel
receive_model = Receive
profile_model = AliquotProfile
profile_item_model = AliquotProfileItem
class MpepuMaternalProfile(BaseMpepuProfile):
requisition_model = MaternalRequisition
name = MaternalRequisition._meta.object_name
site_lab_profiles.register(MpepuMaternalProfile)
class MpepuInfantProfile(BaseMpepuProfile):
requisition_model = InfantRequisition
name = InfantRequisition._meta.object_name
site_lab_profiles.register(MpepuInfantProfile)
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
delivery_days_ago = 20
delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
# print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print "Consent: {}".format(self.maternal_consent)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
# print 'check if mother is eligible'
self.maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=self.registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print 'get the 2000M visit'
self.m_appointment = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2000M')
# print 'create a maternal visit for the 2000M visit'
self.maternal_visit = MaternalVisitFactory(
appointment=self.m_appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=self.maternal_visit,
live_infants=1,
live_infants_to_register=1,
delivery_datetime=delivery_datetime,
has_ga='Yes',
ga=37,
)
# print 'maternal lab del: {}'.format(self.maternal_lab_del)
# print 'get registered subject of the infant'
self.registered_subject = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[0]
print 'infant registered subject {}'.format(self.registered_subject)
self.infant_birth = InfantBirthFactory(
registered_subject=self.registered_subject,
maternal_lab_del=self.maternal_lab_del,
dob=delivery_datetime.date())
# print 'infant birth {}'.format(self.infant_birth)
self.appointment = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2000')
self.infant_visit = InfantVisitFactory(
appointment=self.appointment,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
self.infant_eligibility = InfantEligibilityFactory(
infant_birth=self.infant_birth,
registered_subject=self.registered_subject)
# print 'infant eligibility {}'.format(self.infant_eligibility)
self.app_2010 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2010')
self.visit_2010 = InfantVisitFactory(
appointment=self.app_2010,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando today')
self.app_2020 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2020')
self.visit_2020 = InfantVisitFactory(
appointment=self.app_2020,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando ondrug')
self.app_2030 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2030')
self.visit_2030 = InfantVisitFactory(
appointment=self.app_2030,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando ondrug')
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
self.study_site = StudySite.objects.get(site_code='14')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
HouseholdMemberFactory(household_structure=self.household_structure)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials)
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
Quota.objects.create(app_label='bcpp_subject',
model_name='PimaVl',
target=1,
expires_datetime=timezone.now() +
timedelta(days=1))
self.assertEqual(1, Quota.objects.all().count())
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.appointment = Appointment.objects.get(
registered_subject=self.household_member_male_T0.
registered_subject,
visit_definition__code='T0')
self.subject_visit = SubjectVisitFactory(
household_member=self.household_member_male_T0,
appointment=self.appointment)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.sexual_data = {
'subject_visit': self.subject_visit.id,
'alcohol_sex': 'Myself',
'report_datetime': datetime.today(),
'condom': NO,
'more_sex': NO,
'ever_sex': YES,
'first_sex': 20,
'last_year_partners': None,
'lifetime_sex_partners': 1,
'more_sex': None,
'subject_visit_id': None,
'user_modified': u'',
}
self.data = {
'subject_visit': self.subject_visit.id,
'concurrent': NO,
'first_partner_live': None,
'first_condom_freq': u'Sometimes',
'first_disclose': u'Yes',
'first_exchange': u'30-39',
'first_first_sex': u'Years',
'first_first_sex_calc': 3L,
'first_haart': None,
'first_partner_arm': None,
'first_partner_cp': u'No',
'first_partner_hiv': u'not_sure',
'first_relationship': u'Long-term partner',
'first_sex_current': u'Yes',
'first_sex_freq': None,
'goods_exchange': u'No',
'partner_hiv_test': u'not_sure',
'past_year_sex_freq': u'About once a month',
'report_datetime': datetime.today(),
'sex_partner_community': u'N/A',
'subject_visit_id': None,
'third_last_sex': u'Days',
'third_last_sex_calc': 7L,
'user_modified': u''
}
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey_T0 = Survey.objects.get(survey_slug='bcpp-year-1')
survey_T1 = Survey.objects.get(survey_slug='bcpp-year-2')
survey_T2 = Survey.objects.get(survey_slug='bcpp-year-3')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T0)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T1)
self.household_structure_y3 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y3)
HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
male_dob = date.today() - relativedelta(years=25)
male_age_in_years = 25
male_first_name = 'ERIK'
male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456467')
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials,
registered_subject=registered_subject)
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456468')
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=male_age_in_years,
first_name=male_first_name,
initials=male_initials,
registered_subject=registered_subject)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_male_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.household_member_male_T0.save()
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen=YES,
dob=female_dob,
guardian=NO,
initials=self.household_member_female_T0.initials,
part_time_resident=YES)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen=YES,
dob=male_dob,
guardian=NO,
initials=self.household_member_male_T0.initials,
part_time_resident=YES)
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
confirm_identity='101129811',
identity='101129811',
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=male_dob,
first_name=male_first_name,
initials=male_initials)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure.household,
survey=survey_T0,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T2 = EnumerationHelper(
self.household_structure.household, survey_T0, survey_T1)
enumeration_helper_T2.add_members_from_survey()
self.household_member_female = HouseholdMember.objects.get(
internal_identifier=self.household_member_female_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.household_member_male = HouseholdMember.objects.get(
internal_identifier=self.household_member_male_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y2.household,
survey=survey_T1,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T3 = EnumerationHelper(
self.household_structure.household, survey_T1, survey_T2)
enumeration_helper_T3.add_members_from_survey()
self.household_member_female_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_female.
internal_identifier,
household_structure__survey=survey_T2)
self.household_member_male_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_male.internal_identifier,
household_structure__survey=survey_T2)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y3.household,
survey=survey_T2,
enumerated=True,
enrolled=True).count(), 1)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=subject_consent_male.subject_identifier)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.appointment_female_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T2')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.subject_visit_female_T2 = SubjectVisitFactory(
appointment=self.appointment_female_T2,
household_member=self.household_member_female_T2)
self.appointment_male = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T1')
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_male_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T2')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_male = SubjectVisitFactory(
appointment=self.appointment_male,
household_member=self.household_member_male)
self.subject_visit_male_T2 = SubjectVisitFactory(
appointment=self.appointment_male_T2,
household_member=self.household_member_male_T2)
def setUp(self):
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
TestAppConfiguration()
site_lab_tracker.autodiscover()
TestVisitSchedule().build()
# a test rule group where the source model is RegisteredSubject
# the rules in this rule group will be only evaluated when the visit instance
# is created or saved. Note source_fk is None.
class TestRuleGroupRs(RuleGroup):
test_rule = ScheduledDataRule(
logic=Logic(
predicate=(('gender', 'equals', 'M')),
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel1'])
class Meta:
app_label = 'testing'
source_fk = None
source_model = RegisteredSubject
site_rule_groups.register(TestRuleGroupRs)
# a test rule group where the source model is a scheduled model.
# a scheduled model has a FK to the visit instance (source_fk).
# the rules in this rule group will be evaluated when the source instance
# is created or saved.
class TestRuleGroupSched(RuleGroup):
test_rule = ScheduledDataRule(
logic=Logic(
predicate=(('f1', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel2'])
class Meta:
app_label = 'testing'
source_fk = (TestVisit, 'test_visit')
source_model = TestScheduledModel1
site_rule_groups.register(TestRuleGroupSched)
# a test rule group where the source model is a consent or membership model.
# these models have a FK to registered subject (source_fk).
# the rules in this rule group will only evaluated when the visit instance
# is created or saved.
class TestRuleGroupConsent(RuleGroup):
test_rule = ScheduledDataRule(
logic=Logic(
predicate=(('may_store_samples', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel3'])
class Meta:
app_label = 'testing'
source_fk = (RegisteredSubject, 'registered_subject')
source_model = TestConsentWithMixin
site_rule_groups.register(TestRuleGroupConsent)
class TestRuleGroupConsentFunc(RuleGroup):
test_rule = ScheduledDataRule(
logic=Logic(
predicate=func_condition_true,
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel3'])
class Meta:
app_label = 'testing'
source_fk = (RegisteredSubject, 'registered_subject')
source_model = TestConsentWithMixin
# site_rule_groups.register(TestRuleGroupConsentFunc)
# class TestRuleGroupConsentFunc2(RuleGroup):
# test_rule = ScheduledDataRule(
# logic=Logic(
# predicate=func_condition_false,
# consequence='not_required',
# alternative='new'),
# target_model=['testscheduledmodel3'])
#
# class Meta:
# app_label = 'testing'
# source_fk = (RegisteredSubject, 'registered_subject')
# source_model = TestConsentWithMixin
# site_rule_groups.register(TestRuleGroupConsentFunc2)
self.test_rule_group_rs_cls = TestRuleGroupRs
self.test_rule_group_sched_cls = TestRuleGroupSched
self.test_rule_group_consent_cls = TestRuleGroupConsent
self.test_rule_group_consent_func_cls = TestRuleGroupConsentFunc
# self.test_rule_group_consent_func2_cls = TestRuleGroupConsentFunc2
self.test_visit_factory = TestVisitFactory
self.visit_definition = VisitDefinition.objects.get(code='1000')
self.test_consent = TestConsentWithMixinFactory(gender='M', study_site=StudySite.objects.all()[0], may_store_samples=NO)
self.registered_subject = RegisteredSubject.objects.get(subject_identifier=self.test_consent.subject_identifier)
self.appointment = Appointment.objects.get(registered_subject=self.registered_subject)
from edc.lab.lab_profile.classes import site_lab_profiles
from edc.lab.lab_profile.classes import LabProfile
from .models import Aliquot, AliquotType, Receive, MaternalRequisition, InfantRequisition, AliquotProfile, AliquotProfileItem, Panel
class BaseEitProfile(LabProfile):
aliquot_model = Aliquot
aliquot_type_model = AliquotType
panel_model = Panel
receive_model = Receive
profile_model = AliquotProfile
profile_item_model = AliquotProfileItem
class EitMaternalProfile(BaseEitProfile):
requisition_model = MaternalRequisition
name = MaternalRequisition._meta.object_name
site_lab_profiles.register(EitMaternalProfile)
class EitInfantProfile(BaseEitProfile):
requisition_model = InfantRequisition
name = InfantRequisition._meta.object_name
site_lab_profiles.register(EitInfantProfile)
