def setUp(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
MaternalConsent.objects.all().delete()
self.maternal_consent1 = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent1)
self.registered_subject1 = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent1.subject_identifier)
self.post_elibility1 = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent1,
registered_subject=self.registered_subject1)
self.maternal_consent2 = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent2)
self.registered_subject2 = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent2.subject_identifier)
self.post_elibility2 = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent2,
registered_subject=self.registered_subject2)
self.maternal_consent3 = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent3)
self.registered_subject3 = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent3.subject_identifier)
self.post_elibility3 = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent3,
registered_subject=self.registered_subject3)
def setUp(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
def __init__(self):
self._model = None
self._fields = None
self._model_admin = None
self._model_fields = None
self._visit_definition = None
admin.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
site_rule_groups.autodiscover()
def setUp(self):
try:
site_lab_profiles.register(HnsccSubjectProfile())
except AlreadyRegistered:
pass
HnsccAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
print "assert appointment is created for enrolled subject"
self.enrolled_subject = EnrolledSubjectFactory()
self.appointment = Appointment.objects.get(registered_subject=self.enrolled_subject.registered_subject)
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
delivery_days_ago = 20
self.delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print "Consent: {}".format(self.maternal_consent)
m_registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print 'check if mother is eligible'
self.maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=m_registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'get the 2000M visit'
self.m_appointment = Appointment.objects.get(
registered_subject=m_registered_subject,
visit_definition__code='2000M')
print 'create a maternal visit for the 2000M visit'
self.maternal_visit = MaternalVisitFactory(
appointment=self.m_appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=self.maternal_visit,
live_infants=1,
live_infants_to_register=1,
delivery_datetime=self.delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(self.maternal_lab_del)
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
def setUp(self):
self.household_member = None
self.subject_consent = None
self.registered_subject = None
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.survey = Survey.objects.current_survey()
self.plot = PlotFactory(community='oodi', household_count=1, status='bcpp_clinic')
self.household = HouseholdFactory(plot=self.plot)
self.household_structure = HouseholdStructure.objects.get(household=self.household, survey=self.survey)
self.study_site = StudySite.objects.get(site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
site_mappers.get_current_mapper().verify_survey_dates()
def setUp(self):
try:
site_lab_profiles.register(MpepuMaternalProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
print "Consenting a mother"
MaternalConsent.objects.all().delete()
self.maternal_consent = MaternalConsentFactory(study_site=study_site)
print "Maternal Consent: {}".format(self.maternal_consent)
print 'get maternal registered subject'
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print "check if mother is eligible"
self.post_elibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=self.maternal_consent.registered_subject)
from edc.data_manager.classes import data_manager
from edc.dashboard.section.classes import site_sections
from edc.lab.lab_profile.classes import site_lab_profiles
from edc.dashboard.subject.views import additional_requisition
from edc.map.classes import site_mappers
from edc.subject.lab_tracker.classes import site_lab_tracker
from edc.subject.rule_groups.classes import site_rule_groups
from edc.subject.visit_schedule.classes import site_visit_schedules
from bhp066.apps.bcpp.app_configuration.classes import bcpp_app_configuration
site_lab_profiles.autodiscover()
dajaxice_autodiscover()
site_mappers.autodiscover()
bcpp_app_configuration.prepare()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
site_rule_groups.autodiscover()
site_lab_tracker.autodiscover()
data_manager.prepare()
site_sections.autodiscover()
site_sections.update_section_lists()
admin.autodiscover()
site_mappers.get_current_mapper().verify_survey_dates()
for model in get_models():
try:
django_databrowse.site.register(model)
except:
pass
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
admin.autodiscover()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
self.delivery_days_ago = 20
self.delivery_datetime = datetime.today() - timedelta(
days=self.delivery_days_ago - 3)
print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print "Consent: {}".format(self.maternal_consent)
registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
print 'check if mother is eligible'
maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=registered_subject,
registration_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print 'get the 2000M visit'
appointment = Appointment.objects.get(
registered_subject=registered_subject,
visit_definition__code='2000M')
print 'create a maternal visit for the 2000M visit'
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() -
timedelta(days=self.delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=maternal_visit,
live_infants=2,
live_infants_to_register=2,
delivery_datetime=self.delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(self.maternal_lab_del)
print 'get registered subject of the first infant'
self.registered_subject1 = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[0]
print 'first registered subject {}'.format(self.registered_subject1)
self.infant_birth1 = InfantBirthFactory(
registered_subject=self.registered_subject1,
maternal_lab_del=self.maternal_lab_del,
dob=self.delivery_datetime.date())
print 'first infant birth {}'.format(self.infant_birth1)
appointment1 = Appointment.objects.get(
registered_subject=self.registered_subject1,
visit_definition__code='2000')
infant_visit1 = InfantVisitFactory(appointment=appointment1,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
print 'get registered subject of the second infant'
self.registered_subject2 = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[1]
print 'second registered subject {}'.format(self.registered_subject2)
self.infant_birth2 = InfantBirthFactory(
registered_subject=self.registered_subject2,
maternal_lab_del=self.maternal_lab_del,
dob=self.delivery_datetime.date())
print 'second infant birth {}'.format(self.infant_birth2)
appointment2 = Appointment.objects.get(
registered_subject=self.registered_subject2,
visit_definition__code='2000')
infant_visit2 = InfantVisitFactory(appointment=appointment2,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
delivery_days_ago = 20
delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
# print "Consent a mother"
self.maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print "Consent: {}".format(self.maternal_consent)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.maternal_consent.subject_identifier)
# print 'check if mother is eligible'
self.maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=self.maternal_consent,
registered_subject=self.registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print 'get the 2000M visit'
self.m_appointment = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2000M')
# print 'create a maternal visit for the 2000M visit'
self.maternal_visit = MaternalVisitFactory(
appointment=self.m_appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
# print 'create a maternal_lab_del registering 2 of 2 infants'
self.maternal_lab_del = MaternalLabDelFactory(
maternal_visit=self.maternal_visit,
live_infants=1,
live_infants_to_register=1,
delivery_datetime=delivery_datetime,
has_ga='Yes',
ga=37,
)
# print 'maternal lab del: {}'.format(self.maternal_lab_del)
# print 'get registered subject of the infant'
self.registered_subject = RegisteredSubject.objects.filter(
relative_identifier=self.maternal_consent.subject_identifier
).order_by('subject_identifier')[0]
print 'infant registered subject {}'.format(self.registered_subject)
self.infant_birth = InfantBirthFactory(
registered_subject=self.registered_subject,
maternal_lab_del=self.maternal_lab_del,
dob=delivery_datetime.date())
# print 'infant birth {}'.format(self.infant_birth)
self.appointment = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2000')
self.infant_visit = InfantVisitFactory(
appointment=self.appointment,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy notrando')
self.infant_eligibility = InfantEligibilityFactory(
infant_birth=self.infant_birth,
registered_subject=self.registered_subject)
# print 'infant eligibility {}'.format(self.infant_eligibility)
self.app_2010 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2010')
self.visit_2010 = InfantVisitFactory(
appointment=self.app_2010,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando today')
self.app_2020 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2020')
self.visit_2020 = InfantVisitFactory(
appointment=self.app_2020,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando ondrug')
self.app_2030 = Appointment.objects.get(
registered_subject=self.registered_subject,
visit_definition__code='2030')
self.visit_2030 = InfantVisitFactory(
appointment=self.app_2030,
report_datetime=datetime.today(),
reason='scheduled',
study_status='onstudy rando ondrug')
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
mapper = site_mappers._registry_by_code.get('01')
mapper.survey_dates = {
'bcpp-year-1':
SurveyDatesTuple(name='bhs',
start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=-1) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=-1) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=89)),
'bcpp-year-2':
SurveyDatesTuple(name='t1',
start_date=date.today() + relativedelta(years=0) +
relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=0) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=0) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=0) + relativedelta(days=89)),
}
bcpp_app_configuration.survey_setup = {
'bcpp-year-1': {
'survey_name':
'BCPP Year 1',
'survey_slug':
'bcpp-year-1',
'datetime_start':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=30)
},
'bcpp-year-2': {
'survey_name': 'BCPP Year 2',
'survey_slug': 'bcpp-year-2',
'datetime_start': datetime.today() + relativedelta(days=-90),
'datetime_end': datetime.today() + relativedelta(days=90)
},
'bcpp-year-3': {
'survey_name':
'BCPP Year 3',
'survey_slug':
'bcpp-year-3',
'datetime_start':
datetime.today() + relativedelta(years=1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=1) +
relativedelta(days=30)
},
}
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.survey2 = Survey.objects.current_survey()
self.survey1 = Survey.objects.previous_survey()
plot = PlotFactory(community='test_community',
household_count=1,
status='residential_habitable')
self.household = Household.objects.get(plot=plot)
self.source_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey1)
self.target_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey2)
self.representative_eligibility = RepresentativeEligibilityFactory(
household_structure=self.source_household_structure)
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
# add members to source
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
from dajaxice.core import dajaxice_autodiscover, dajaxice_config
from edc.data_manager.classes import data_manager
from edc.dashboard.section.classes import site_sections
from edc.lab.lab_profile.classes import site_lab_profiles
from edc.dashboard.subject.views import additional_requisition
from edc.subject.lab_tracker.classes import site_lab_tracker
from edc.subject.rule_groups.classes import site_rule_groups
from edc.subject.visit_schedule.classes import site_visit_schedules
from apps.hnscc.app_configuration.classes import HnsccAppConfiguration
site_lab_profiles.autodiscover()
dajaxice_autodiscover()
HnsccAppConfiguration().prepare()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
site_rule_groups.autodiscover()
site_lab_tracker.autodiscover()
data_manager.prepare()
site_sections.autodiscover()
site_sections.update_section_lists()
admin.autodiscover()
for model in get_models():
try:
django_databrowse.site.register(model)
except:
pass
APP_NAME = settings.APP_NAME
def setUp(self):
try:
site_lab_profiles.register(MpepuInfantProfile())
except AlreadyRegistered:
pass
MpepuAppConfiguration().prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
study_site = StudySiteFactory()
content_type_map = ContentTypeMap.objects.get(
model='maternalconsent', app_label='mpepu_maternal')
consent_catalogue = ConsentCatalogueFactory(
content_type_map=content_type_map)
consent_catalogue.add_for_app = 'mpepu_infant'
consent_catalogue.save()
print "register a mother "
delivery_days_ago = 20
delivery_datetime = datetime.today() - timedelta(
days=delivery_days_ago - 3)
maternal_consent = MaternalConsentFactory(
study_site=study_site,
consent_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print "Consent: {}".format(maternal_consent)
m_registered_subject = RegisteredSubject.objects.get(
subject_identifier=maternal_consent.subject_identifier)
maternal_eligibility = MaternalEligibilityPostFactory(
maternal_consent=maternal_consent,
registered_subject=m_registered_subject,
registration_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
appointment = Appointment.objects.get(
registered_subject=m_registered_subject,
visit_definition__code='2000M')
maternal_visit = MaternalVisitFactory(
appointment=appointment,
report_datetime=datetime.today() -
timedelta(days=delivery_days_ago))
print 'create a maternal_lab_del registering 2 of 2 infants'
maternal_lab_del = MaternalLabDelFactory(
maternal_visit=maternal_visit,
live_infants=2,
live_infants_to_register=2,
delivery_datetime=delivery_datetime,
has_ga='Yes',
ga=37,
)
print 'maternal lab del: {}'.format(maternal_lab_del)
print 'register infant 1 of 2'
self.registered_subject1 = RegisteredSubject.objects.filter(
relative_identifier=maternal_consent.subject_identifier).order_by(
'subject_identifier')[0]
print 'first registered subject {}'.format(self.registered_subject1)
self.infant_birth1 = InfantBirthFactory(
registered_subject=self.registered_subject1,
maternal_lab_del=maternal_lab_del,
dob=delivery_datetime.date())
print 'first infant birth {}'.format(self.infant_birth1)
self.infant_eligibility1 = InfantEligibilityFactory(
infant_birth=self.infant_birth1,
registered_subject=self.infant_birth1.registered_subject,
clinical_jaundice='No',
anemia_neutropenia='No',
hiv_result_reference='PENDING',
maternal_feeding_choice='BF',
maternal_art_status='ON',
rando_bf_duration='Yes',
ctx_contra='No',
congen_anomaly='No',
randomization_site='Gaborone',
)
print 'First infant Eligibility {}'.format(self.infant_eligibility1)
print "register infant 2 of 2"
self.registered_subject2 = RegisteredSubject.objects.filter(
relative_identifier=maternal_consent.subject_identifier).order_by(
'subject_identifier')[1]
print 'second registered subject {}'.format(self.registered_subject2)
infant_birth2 = InfantBirthFactory(
registered_subject=self.registered_subject2,
maternal_lab_del=maternal_lab_del,
dob=delivery_datetime.date())
print 'second infant birth {}'.format(infant_birth2)
self.registered_subject2.dob = infant_birth2.dob
self.registered_subject2.gender = infant_birth2.gender
self.registered_subject2.initials = infant_birth2.initials
self.registered_subject2.relative_identifier = m_registered_subject.subject_identifier
self.registered_subject2.save()