def test_barplot():
"Test plot.Barplot"
ds = datasets.get_uv()
# average
plot.Barplot('fltvar', ds=ds)
plot.Barplot('fltvar', match='rm', ds=ds)
# one category
p = plot.Barplot('fltvar + 2', 'A', ds=ds)
assert p.get_ylim()[0] == 0
p = plot.Barplot('fltvar - 2', 'A', 'rm', ds=ds)
assert p.get_ylim()[1] == 0
# multiple categories
plot.Barplot('fltvar', 'A%B', match='rm', ds=ds)
plot.Barplot('fltvar', 'A%B', match='rm', ds=ds, pool_error=False)
# test against 0
plot.Barplot('fltvar', 'A%B', match='rm', test=0, ds=ds)
# cells
plot.Barplot('fltvar', 'A%B', cells=(('a2', 'b2'), ('a1', 'b1')), ds=ds)
plot.Barplot('fltvar',
'A%B',
match='rm',
cells=(('a2', 'b2'), ('a1', 'b1')),
ds=ds)
# Fixed top
p = plot.Barplot('fltvar', 'A%B', ds=ds, top=2, test_markers=False)
ax = p._axes[0]
assert ax.get_ylim()[1] == 2
def test_report():
"Test fmtxt.Report class"
tempdir = tempfile.mkdtemp()
report = fmtxt.Report("Test Report")
section = report.add_section(u'unicode: \xe2 abc')
ds = datasets.get_uv()
p = plot.Barplot('fltvar', 'A', sub="B=='b1'", ds=ds, show=False)
image = p.image()
section.add_figure("test", image)
report.sign()
# report output
print(report)
dst = os.path.join(tempdir, 'report.html')
report.save_html(dst)
# test meta attribute reading
eq_(read_meta(dst), {})
report.save_html(dst, meta={'samples': 100, 'text': 'blah'})
eq_(read_meta(dst), {'samples': '100', 'text': 'blah'})
# clean up
shutil.rmtree(tempdir)
def test_boxplot():
"Test plot.Boxplot"
ds = datasets.get_uv()
plot.Boxplot('fltvar', 'A%B', match='rm', ds=ds, show=False)
# one category
plot.Boxplot('fltvar', ds=ds, test=False, show=False)
plot.Boxplot('fltvar', ds=ds, show=False)
plot.Boxplot('fltvar', match='rm', ds=ds, show=False)
# many pairwise significances
ds['fltvar'][ds.eval("A%B==('a1','b1')")] += 1
ds['fltvar'][ds.eval("A%B==('a2','b2')")] -= 1
ds['C'] = Factor('qw', repeat=10, tile=4)
plot.Boxplot('fltvar', 'A%B%C', ds=ds, show=False)
# long labels
ds['A'].relabel({
'a1': 'a very long label',
'a2': 'another very long label'
})
p = plot.Barplot('fltvar', 'A%B', ds=ds, show=False)
labels = p._ax.get_xticklabels()
bbs = [l.get_window_extent() for l in labels]
for i in xrange(len(bbs) - 1):
ok_(bbs[i].x1 < bbs[i + 1].x0)
def test_barplot():
"Test plot.Barplot"
ds = datasets.get_uv()
# one category
plot.Barplot('fltvar', ds=ds, test=False, show=False)
plot.Barplot('fltvar', ds=ds, show=False)
plot.Barplot('fltvar', match='rm', ds=ds, show=False)
# multiple categories
plot.Barplot('fltvar', 'A%B', match='rm', ds=ds, show=False)
plot.Barplot('fltvar',
'A%B',
match='rm',
ds=ds,
pool_error=False,
show=False)
plot.Barplot('fltvar', 'A%B', match='rm', test=0, ds=ds, show=False)
# Fixed top
p = plot.Barplot('fltvar',
'A%B',
ds=ds,
top=2,
test_markers=False,
show=False)
ax = p._axes[0]
eq_(ax.get_ylim()[1], 2)
def test_report():
"Test fmtxt.Report class"
tempdir = tempfile.mkdtemp()
report = fmtxt.Report("Test Report")
section = report.add_section(u'unicode: \xe2 abc')
ds = datasets.get_uv()
p = plot.Barplot('fltvar', 'A', sub="B=='b1'", ds=ds, show=False)
image = p.image()
section.add_figure("test", image)
report.sign()
# report output
print report
dst = os.path.join(tempdir, 'report.html')
report.save_html(dst)
# clean up
shutil.rmtree(tempdir)