def on_form_ok(self,params):
if params.has_key("filenames") and len(params["filenames"]) == 0:
self.run_select_files_msg()
return
error_message = self.check_params(params)
if len(error_message) >0:
self.show_error_message(error_message)
return
if params["alt"] != 0 or params["az"] != 0 or params["phi"] != 0:
params["rotate"] = "%.2f,%.2f,%.2f" %(params["az"],params["alt"],params["phi"])
if params.has_key("rotate") or params.has_key("filter_processor"):
success,cmd = self.process_all(params)
if not success:
error("Command failed:"+cmd)
return
else:
error("You have to supply a filter or a non zero rotation for any filtering to occur")
return
self.emit(QtCore.SIGNAL("task_idle"))
self.form.close()
self.form = None
self.write_db_entries(params)
def on_form_ok(self, params):
if params.has_key("filenames") and len(params["filenames"]) == 0:
self.run_select_files_msg()
return
error_message = self.check_params(params)
if len(error_message) > 0:
self.show_error_message(error_message)
return
if params["alt"] != 0 or params["az"] != 0 or params["phi"] != 0:
params["rotate"] = "%.2f,%.2f,%.2f" % (params["az"], params["alt"],
params["phi"])
if params.has_key("rotate") or params.has_key("filter_processor"):
success, cmd = self.process_all(params)
if not success:
error("Command failed:" + cmd)
return
else:
error(
"You have to supply a filter or a non zero rotation for any filtering to occur"
)
return
self.emit(QtCore.SIGNAL("task_idle"))
self.form.close()
self.form = None
self.write_db_entries(params)
def au_selected(self,refine_dir,cls):
self.refine_dir = refine_dir
get_application().setOverrideCursor(Qt.BusyCursor)
data = []
for d in self.au_data[refine_dir]:
if d[0] == cls:
data = d;
break
if len(data) == 0:
error("error, no data for %s %s, returning" %(refine_dir,cls))
# print "error, no data for",au,cls,"returning"
self.events_handlers["inspect"].reset()
get_application().setOverrideCursor(Qt.ArrowCursor)
return
if not self.readfrom:
try :
self.particle_file=js_open_dict(refine_dir+"/0_refine_parms.json")["input"]
except:
error("No data in "+refine_dir )
self.events_handlers["inspect"].reset()
get_application().setOverrideCursor(Qt.ArrowCursor)
return
self.average_file = cls
self.projection_file = data[4]
self.alignment_file = data[2]
self.clsdb = data[1]
self.dx = None
self.dy = None
self.da = None
self.dflip = None
self.classes = None
eulers = get_eulers_from(self.average_file)
#s = Symmetries.get("d7")
#eulers = s.gen_orientations("rand",{"n":EMUtil.get_image_count(self.average_file)})
self.specify_eulers(eulers)
#from emimagemx import EMDataListCache
#a = EMData.read_images(self.average_file)
#a = [test_image() for i in range(EMUtil.get_image_count(self.average_file))]
#print len(a),len(eulers)
#b = [a[i].set_attr("xform.projection",eulers[i]) for i in range(len(eulers))]
#b = [a[i].set_attr("ptcl_repr",1) for i in range(len(eulers))]
self.set_emdata_list_as_data(EMLightWeightParticleCache.from_file(self.average_file),"ptcl_repr")
#self.set_emdata_list_as_data(EMDataListCache(self.average_file),"ptcl_repr")
# self.set_emdata_list_as_data(a,"ptcl_repr")
self.force_update = True
self.au_point_selected(self.class_idx,None)
# if we have the same number of Eulers we can update everything
# if self.previous_len == len(eulers) : self.events_handlers["inspect"].repeat_event()
# else:self.events_handlers["inspect"].reset()
self.previous_len = len(eulers)
if not self.init_lock:self.updateGL()
get_application().setOverrideCursor(Qt.ArrowCursor)
def au_selected(self,refine_dir,cls):
self.refine_dir = refine_dir
get_application().setOverrideCursor(Qt.BusyCursor)
data = []
for d in self.au_data[refine_dir]:
if d[0] == cls:
data = d;
break
if len(data) == 0:
error("error, no data for %s %s, returning" %(refine_dir,cls))
# print "error, no data for",au,cls,"returning"
self.events_handlers["inspect"].reset()
get_application().setOverrideCursor(Qt.ArrowCursor)
return
if not self.readfrom:
try :
self.particle_file=js_open_dict(refine_dir+"/0_refine_parms.json")["input"]
except:
error("No data in "+refine_dir )
self.events_handlers["inspect"].reset()
get_application().setOverrideCursor(Qt.ArrowCursor)
return
self.average_file = cls
self.projection_file = data[4]
self.alignment_file = data[2]
self.clsdb = data[1]
self.dx = None
self.dy = None
self.da = None
self.dflip = None
self.classes = None
eulers = get_eulers_from(self.average_file)
#s = Symmetries.get("d7")
#eulers = s.gen_orientations("rand",{"n":EMUtil.get_image_count(self.average_file)})
self.specify_eulers(eulers)
#from emimagemx import EMDataListCache
#a = EMData.read_images(self.average_file)
#a = [test_image() for i in range(EMUtil.get_image_count(self.average_file))]
#print len(a),len(eulers)
#b = [a[i].set_attr("xform.projection",eulers[i]) for i in range(len(eulers))]
#b = [a[i].set_attr("ptcl_repr",1) for i in range(len(eulers))]
self.set_emdata_list_as_data(EMLightWeightParticleCache.from_file(self.average_file),"ptcl_repr")
#self.set_emdata_list_as_data(EMDataListCache(self.average_file),"ptcl_repr")
# self.set_emdata_list_as_data(a,"ptcl_repr")
self.force_update = True
self.au_point_selected(self.class_idx,None)
# if we have the same number of Eulers we can update everything
# if self.previous_len == len(eulers) : self.events_handlers["inspect"].repeat_event()
# else:self.events_handlers["inspect"].reset()
self.previous_len = len(eulers)
if not self.init_lock:self.updateGL()
get_application().setOverrideCursor(Qt.ArrowCursor)
def on_form_ok(self,params):
if not params.has_key("tomo_filt_choice") or params["tomo_filt_choice"] == None:
error("Please choose some data")
return
choice = params["tomo_filt_choice"]
task = EMTomoBootstrapTask(self.particles_map[self.particles_name_map[choice]],self.name_map)
self.emit(QtCore.SIGNAL("replace_task"),task,"Filter Tomo Particles")
self.form.close()
self.form = None
self.write_db_entries(params)
def on_form_ok(self,params):
if "tomo_filt_choice" not in params or params["tomo_filt_choice"] == None:
error("Please choose some data")
return
choice = params["tomo_filt_choice"]
task = EMTomoBootstrapTask(self.particles_map[self.particles_name_map[choice]],self.name_map)
self.emit(QtCore.SIGNAL("replace_task"),task,"Filter Tomo Particles")
self.form.close()
self.form = None
self.write_db_entries(params)
def on_form_ok(self, params):
if not params.has_key(
"tomo_filt_choice") or params["tomo_filt_choice"] == None:
error("Please choose some data")
return
choice = params["tomo_filt_choice"]
task = self.task_type(
self.particles_map[self.particles_name_map[choice]], self.name_map)
self.emit(QtCore.SIGNAL("replace_task"), task, "Filter Tomo Particles")
self.form.close()
self.form = None
self.write_db_entries(params)
