def __init__(self,
input_dim,
output_dim,
model_size="small",
neigh_input_dim=None,
dropout=0.,
bias=False,
act=tf.nn.relu,
name=None,
concat=False,
**kwargs):
super(MeanPoolingAggregator, self).__init__(**kwargs)
self.dropout = dropout
self.bias = bias
self.act = act
self.concat = concat
if neigh_input_dim is None:
neigh_input_dim = input_dim
if name is not None:
name = '/' + name
else:
name = ''
if model_size == "small":
hidden_dim = self.hidden_dim = 512
elif model_size == "big":
hidden_dim = self.hidden_dim = 1024
self.mlp_layers = []
self.mlp_layers.append(
Dense(input_dim=neigh_input_dim,
output_dim=hidden_dim,
act=tf.nn.relu,
dropout=dropout,
sparse_inputs=False,
logging=self.logging))
with tf.variable_scope(self.name + name + '_vars'):
self.vars['neigh_weights'] = glorot([hidden_dim, output_dim],
name='neigh_weights')
self.vars['self_weights'] = glorot([input_dim, output_dim],
name='self_weights')
if self.bias:
self.vars['bias'] = zeros([self.output_dim], name='bias')
if self.logging:
self._log_vars()
self.input_dim = input_dim
self.output_dim = output_dim
self.neigh_input_dim = neigh_input_dim
def __init__(self, input_dim1, input_dim2, placeholders, dropout=False, act=tf.nn.sigmoid,
loss_fn='xent', neg_sample_weights=1.0,
bias=False, bilinear_weights=False, **kwargs):
"""
Basic class that applies skip-gram-like loss
(i.e., dot product of node+target and node and negative samples)
Args:
bilinear_weights: use a bilinear weight for affinity calculation: u^T A v. If set to
false, it is assumed that input dimensions are the same and the affinity will be
based on dot product.
"""
super(BipartiteEdgePredLayer, self).__init__(**kwargs)
self.input_dim1 = input_dim1
self.input_dim2 = input_dim2
self.act = act
self.bias = bias
self.eps = 1e-7
# Margin for hinge loss
self.margin = 0.1
self.neg_sample_weights = neg_sample_weights
self.bilinear_weights = bilinear_weights
if dropout:
self.dropout = placeholders['dropout']
else:
self.dropout = 0.
# output a likelihood term
self.output_dim = 1
with tf.variable_scope(self.name + '_vars'):
# bilinear form
if bilinear_weights:
#self.vars['weights'] = glorot([input_dim1, input_dim2],
# name='pred_weights')
self.vars['weights'] = tf.get_variable(
'pred_weights',
shape=(input_dim1, input_dim2),
dtype=tf.float32,
initializer=tf.contrib.layers.xavier_initializer())
if self.bias:
self.vars['bias'] = zeros([self.output_dim], name='bias')
if loss_fn == 'xent':
self.loss_fn = self._xent_loss
elif loss_fn == 'skipgram':
self.loss_fn = self._skipgram_loss
elif loss_fn == 'hinge':
self.loss_fn = self._hinge_loss
if self.logging:
self._log_vars()
def __init__(self,
input_dim,
output_dim,
model_size="small",
neigh_input_dim=None,
dropout=0.,
bias=False,
act=tf.nn.relu,
name=None,
concat=False,
**kwargs):
super(SeqAggregator, self).__init__(**kwargs)
self.dropout = dropout
self.bias = bias
self.act = act
self.concat = concat
if neigh_input_dim is None:
neigh_input_dim = input_dim
if name is not None:
name = '/' + name
else:
name = ''
if model_size == "small":
hidden_dim = self.hidden_dim = 128
elif model_size == "big":
hidden_dim = self.hidden_dim = 256
with tf.variable_scope(self.name + name + '_vars'):
self.vars['neigh_weights'] = glorot([hidden_dim, output_dim],
name='neigh_weights')
self.vars['self_weights'] = glorot([input_dim, output_dim],
name='self_weights')
if self.bias:
self.vars['bias'] = zeros([self.output_dim], name='bias')
if self.logging:
self._log_vars()
self.input_dim = input_dim
self.output_dim = output_dim
self.neigh_input_dim = neigh_input_dim
self.cell = tf.contrib.rnn.BasicLSTMCell(self.hidden_dim)
def __init__(self,
input_dim,
output_dim,
dropout=0.,
act=tf.nn.relu,
placeholders=None,
bias=True,
featureless=False,
sparse_inputs=False,
**kwargs):
super(Dense, self).__init__(**kwargs)
self.dropout = dropout
self.act = act
self.featureless = featureless
self.bias = bias
self.input_dim = input_dim
self.output_dim = output_dim
# helper variable for sparse dropout
self.sparse_inputs = sparse_inputs
if sparse_inputs:
self.num_features_nonzero = placeholders['num_features_nonzero']
with tf.variable_scope(self.name + '_vars'):
self.vars['weights'] = tf.get_variable(
'weights',
shape=(input_dim, output_dim),
dtype=tf.float32,
initializer=tf.contrib.layers.xavier_initializer(),
regularizer=tf.contrib.layers.l2_regularizer(
FLAGS.weight_decay))
if self.bias:
self.vars['bias'] = zeros([output_dim], name='bias')
if self.logging:
self._log_vars()
def __init__(self,
input_dim,
output_dim,
neigh_input_dim=None,
dropout=0.,
bias=False,
act=tf.nn.relu,
name=None,
concat=False,
**kwargs):
super(MeanAggregator, self).__init__(**kwargs)
self.dropout = dropout
self.bias = bias
self.act = act
self.concat = concat
if neigh_input_dim is None:
neigh_input_dim = input_dim
if name is not None:
name = '/' + name
else:
name = ''
with tf.variable_scope(self.name + name + '_vars'):
self.vars['neigh_weights'] = glorot([neigh_input_dim, output_dim],
name='neigh_weights')
self.vars['self_weights'] = glorot([input_dim, output_dim],
name='self_weights')
if self.bias:
self.vars['bias'] = zeros([self.output_dim], name='bias')
if self.logging:
self._log_vars()
self.input_dim = input_dim
self.output_dim = output_dim