def run_form(self):
from emform import EMTableFormWidget
self.form = EMTableFormWidget(self.get_params())
self.form.resize(*self.preferred_size)
self.form.setWindowTitle(self.window_title)
get_application().show_specific(self.form)
from PyQt4 import QtCore
QtCore.QObject.connect(self.form, QtCore.SIGNAL("emform_ok"),
self.on_form_ok)
QtCore.QObject.connect(self.form, QtCore.SIGNAL("emform_cancel"),
self.on_form_cancel)
QtCore.QObject.connect(self.form, QtCore.SIGNAL("emform_close"),
self.on_form_close)
def run_form(self):
from emform import EMTableFormWidget
self.form = EMTableFormWidget(self.get_params())
self.form.resize(*self.preferred_size)
self.form.setWindowTitle(self.window_title)
get_application().show_specific(self.form)
from PyQt4 import QtCore
QtCore.QObject.connect(self.form,QtCore.SIGNAL("emform_ok"),self.on_form_ok)
QtCore.QObject.connect(self.form,QtCore.SIGNAL("emform_cancel"),self.on_form_cancel)
QtCore.QObject.connect(self.form,QtCore.SIGNAL("emform_close"),self.on_form_close)
class EMPreferencesTask(WorkFlowTask):
def __init__(self,application=None):
WorkFlowTask.__init__(self)
self.preferred_size = [240,240]
self.window_title = "EMAN2 preferences"
def get_params(self):
params = []
params.append(["e2display",self.__get_display_preference_params()])
params.append(["e2spt_boxer",self.__get_tomoboxer_preference_params()])
return params
def __get_display_preference_params(self):
HOMEDB.open_dict("display_preferences")
db = HOMEDB.display_preferences
p2d_auto_contrast = ParamDef(name="display_2d_auto_contrast",vartype="boolean",desc_short="2D image auto contrast",desc_long="Should the 2D image display module adjust contrast settings automatically?",property=None,defaultunits=db.get("display_2d_auto_contrast",dfl=True),choices=None)
p2d_stack_auto_contrast = ParamDef(name="display_stack_auto_contrast",vartype="boolean",desc_short="Stack (2D) - auto contrast",desc_long="Should the stack display module adjust contrast settings automatically?",property=None,defaultunits=db.get("display_stack_auto_contrast",dfl=True),choices=None)
p2d_stack_n = ParamDef(name="display_stack_np_for_auto",vartype="int",desc_short="Stack (2D) - # particles used for contrast settings",desc_long="When the stack viewer starts up it investigates the parameters of the first n particles to determine contrast settings. Specify -1 to force the stack viewer to investigate all particles.",property=None,defaultunits=db.get("display_stack_np_for_auto",dfl=5),choices=None)
params = []
params.append(p2d_auto_contrast)
params.append(p2d_stack_auto_contrast)
params.append(p2d_stack_n)
self.__display_entries = ["display_2d_auto_contrast","display_stack_auto_contrast","display_stack_np_for_auto"]
return params
def __get_tomoboxer_preference_params(self):
HOMEDB.open_dict("e2tomoboxer_preferences")
db = HOMEDB.e2tomoboxer_preferences
plargest_dim = ParamDef(name="largest_allowable_dimension",vartype="int",desc_short="Shrink to this",desc_long="The largest permissible image dimension of a tomogram after shrinking",property=None,defaultunits=db.get("largest_allowable_dimension",dfl=1024),choices=None)
params = []
params.append(plargest_dim)
self.__tomoboxer_entries = ["largest_allowable_dimension"]
return params
def on_form_ok(self, params):
self.write_db_entries(params)
self.form.close()
self.form = None
from PyQt4 import QtCore
self.emit(QtCore.SIGNAL("task_idle"))
def run_form(self):
from emform import EMTableFormWidget
self.form = EMTableFormWidget(self.get_params())
self.form.resize(*self.preferred_size)
self.form.setWindowTitle(self.window_title)
get_application().show_specific(self.form)
from PyQt4 import QtCore
QtCore.QObject.connect(self.form,QtCore.SIGNAL("emform_ok"),self.on_form_ok)
QtCore.QObject.connect(self.form,QtCore.SIGNAL("emform_cancel"),self.on_form_cancel)
QtCore.QObject.connect(self.form,QtCore.SIGNAL("emform_close"),self.on_form_close)
def write_db_entries(self,params):
HOMEDB.open_dict("display_preferences")
db_display = HOMEDB.display_preferences
HOMEDB.open_dict("e2tomoboxer_preferences")
db_tomo = HOMEDB.e2tomoboxer_preferences
tmp_db = None
for key,value in params.items():
if key in self.__tomoboxer_entries:
tmp_db = db_tomo
elif key in self.__display_entries:
tmp_db = db_display
else: raise NotImplementedError("A developer has probably forgotten something")
tmp_db[key] = value
class EMPreferencesTask(WorkFlowTask):
def __init__(self, application=None):
WorkFlowTask.__init__(self)
self.preferred_size = [240, 240]
self.window_title = "EMAN2 preferences"
def get_params(self):
params = []
params.append(["e2display", self.__get_display_preference_params()])
params.append(
["e2spt_boxer",
self.__get_tomoboxer_preference_params()])
return params
def __get_display_preference_params(self):
HOMEDB.open_dict("display_preferences")
db = HOMEDB.display_preferences
p2d_auto_contrast = ParamDef(
name="display_2d_auto_contrast",
vartype="boolean",
desc_short="2D image auto contrast",
desc_long=
"Should the 2D image display module adjust contrast settings automatically?",
property=None,
defaultunits=db.get("display_2d_auto_contrast", dfl=True),
choices=None)
p2d_stack_auto_contrast = ParamDef(
name="display_stack_auto_contrast",
vartype="boolean",
desc_short="Stack (2D) - auto contrast",
desc_long=
"Should the stack display module adjust contrast settings automatically?",
property=None,
defaultunits=db.get("display_stack_auto_contrast", dfl=True),
choices=None)
p2d_stack_n = ParamDef(
name="display_stack_np_for_auto",
vartype="int",
desc_short="Stack (2D) - # particles used for contrast settings",
desc_long=
"When the stack viewer starts up it investigates the parameters of the first n particles to determine contrast settings. Specify -1 to force the stack viewer to investigate all particles.",
property=None,
defaultunits=db.get("display_stack_np_for_auto", dfl=5),
choices=None)
params = []
params.append(p2d_auto_contrast)
params.append(p2d_stack_auto_contrast)
params.append(p2d_stack_n)
self.__display_entries = [
"display_2d_auto_contrast", "display_stack_auto_contrast",
"display_stack_np_for_auto"
]
return params
def __get_tomoboxer_preference_params(self):
HOMEDB.open_dict("e2tomoboxer_preferences")
db = HOMEDB.e2tomoboxer_preferences
plargest_dim = ParamDef(
name="largest_allowable_dimension",
vartype="int",
desc_short="Shrink to this",
desc_long=
"The largest permissible image dimension of a tomogram after shrinking",
property=None,
defaultunits=db.get("largest_allowable_dimension", dfl=1024),
choices=None)
params = []
params.append(plargest_dim)
self.__tomoboxer_entries = ["largest_allowable_dimension"]
return params
def on_form_ok(self, params):
self.write_db_entries(params)
self.form.close()
self.form = None
from PyQt4 import QtCore
self.emit(QtCore.SIGNAL("task_idle"))
def run_form(self):
from emform import EMTableFormWidget
self.form = EMTableFormWidget(self.get_params())
self.form.resize(*self.preferred_size)
self.form.setWindowTitle(self.window_title)
get_application().show_specific(self.form)
from PyQt4 import QtCore
QtCore.QObject.connect(self.form, QtCore.SIGNAL("emform_ok"),
self.on_form_ok)
QtCore.QObject.connect(self.form, QtCore.SIGNAL("emform_cancel"),
self.on_form_cancel)
QtCore.QObject.connect(self.form, QtCore.SIGNAL("emform_close"),
self.on_form_close)
def write_db_entries(self, params):
HOMEDB.open_dict("display_preferences")
db_display = HOMEDB.display_preferences
HOMEDB.open_dict("e2tomoboxer_preferences")
db_tomo = HOMEDB.e2tomoboxer_preferences
tmp_db = None
for key, value in params.items():
if key in self.__tomoboxer_entries:
tmp_db = db_tomo
elif key in self.__display_entries:
tmp_db = db_display
else:
raise NotImplementedError(
"A developer has probably forgotten something")
tmp_db[key] = value