def _MakeLC(self, Path=LightcurvePath):
"""Main function of the Lightcurve script. Read the config file and run the gtlike analysis"""
enricodir = environ.DIRS.get("ENRICO_DIR")
fermidir = environ.DIRS.get("FERMI_DIR")
self.PrepareLC(self.config["LightCurve"]["MakeConfFile"]) # Get the config file
for i in xrange(self.Nbin):
if self.submit == "yes":
cmd = "enrico_sed " + self.configfile[i]
scriptname = self.LCfolder + "LC_Script_" + str(i) + ".sh"
JobLog = self.LCfolder + "LC_Job_" + str(i) + ".log"
JobName = (
(
self.config["target"]["name"]
+ "_"
+ self.config["analysis"]["likelihood"]
+ "_LC_"
+ self.config["file"]["tag"]
)
+ "_"
+ str(i)
+ ".log"
)
call(cmd, enricodir, fermidir, scriptname, JobLog, JobName) # Submit the job
else:
run(self.configfile[i]) # run in command line
def _MakeLC(self, Path=LightcurvePath):
#import gc
import os
#gc.enable()
'''Main function of the Lightcurve script. Read the config file and run the gtlike analysis'''
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
self.PrepareLC(self.config['BayesianBlocks']
['MakeConfFile']) #Get the config file
for i in xrange(self.Nbin):
#gc.collect()
cmd = str("enrico_sed %s && enrico_plot_bayesianblocks %s" %
(self.configfile[i], self.parent_filename))
if self.submit == 'yes':
scriptname = self.LCfolder + "LC_Script_" + str(i) + ".sh"
JobLog = self.LCfolder + "LC_Job_" + str(i) + ".log"
JobName = (self.config['target']['name'] + "_" +
self.config['analysis']['likelihood'] + "_LC_" +
self.config['file']['tag']) + "_" + str(i) + ".log"
call(cmd, enricodir, fermidir, scriptname, JobLog,
JobName) #Submit the job
else:
os.system(cmd)
def run_analysis(self):
import shutil
from enrico import environ
from enrico.config import get_config
from enrico.appertureLC import AppLC
from enrico.submit import call
from enrico.constants import AppLCPath
infile = self.configfile
config = get_config(infile)
self.remove_prev_dir()
verbose("-> Running the analysis for %s" %(analysis.name))
# We will always try to run it in parallel,
# either with python multiproc or with external torque pbs.
if config['Submit'] == 'no':
global fqueue
fqueue.put(infile)
else:
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
cmd = enricodir+"/enrico/appertureLC.py %s" %infile
LCoutfolder = config['out']+"/"+AppLCPath
os.system("mkdir -p "+LCoutfolder)
prefix = LCoutfolder +"/"+ config['target']['name'] + "_AppertureLightCurve"
scriptname = prefix+"_Script.sh"
JobLog = prefix + "_Job.log"
JobName = "LC_%s" %self.name
call(cmd, enricodir, fermidir, scriptname, JobLog, JobName)
verbose("--> Job sent successfully")
def _launch(self,ra,dec,i,j):
""" Launch a job (either pixel evaluation or row evaluation).
Can be the submittion of a job to a cluster """
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
cmd = enricodir+"/enrico/tsmap.py "+os.getcwd()+"/"+self.infile +" "+ str(ra) +" "+ str(dec) +" "+ str(i) +" "+ str(j) #cmd line to send
if self.config['Submit'] == 'yes':
prefix = self.tsfolder + "/"+TSMapPath+"_" + str(i) +"_"+ str(j)
scriptname = prefix + "_Script.sh"
JobLog = prefix + "_Job.log"
JobName = (self.config['target']['name'] + "_TSMap_" + str(i) +"_"+ str(j))
call(cmd, enricodir, fermidir, scriptname, JobLog, JobName) #submition
else :
os.system(cmd) #run directly
def _launch(self,ra,dec,i,j):
""" Launch a job (either pixel evaluation or row evaluation).
Can be the submittion of a job to a cluster """
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
cmd = enricodir+"/enrico/tsmap.py "+os.getcwd()+"/"+self.infile +" "+ str(ra) +" "+ str(dec) +" "+ str(i) +" "+ str(j) #cmd line to send
if self.config['Submit'] == 'yes':
prefix = self.tsfolder + "/"+TSMapPath+"_" + str(i) +"_"+ str(j)
scriptname = prefix + "_Script.sh"
JobLog = prefix + "_Job.log"
JobName = (self.config['target']['name'] + "_TSMap_" + str(i) +"_"+ str(j))
call(cmd, enricodir, fermidir, scriptname, JobLog, JobName) #submition
else :
os.system(cmd) #run directly
def _MakeLC(self,Path=LightcurvePath) :
'''Main function of the Lightcurve script. Read the config file and run the gtlike analysis'''
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
self.PrepareLC(self.config['LightCurve']['MakeConfFile'])#Get the config file
for i in xrange(self.Nbin):
if self.submit == 'yes':
cmd = "enrico_sed "+self.configfile[i]
scriptname = self.LCfolder+"LC_Script_"+str(i)+".sh"
JobLog = self.LCfolder+"LC_Job_"+str(i)+".log"
JobName = (self.config['target']['name'] + "_" +
self.config['analysis']['likelihood'] +
"_LC_" + self.config['file']['tag'])+"_"+str(i)+".log"
call(cmd,enricodir,fermidir,scriptname,JobLog,JobName)#Submit the job
else :
run(self.configfile[i])#run in command line
def RunEbin(folder,Nbin,Fit,FitRunner):
if int(Nbin) > 0:
configfiles = PrepareEbin(Fit, FitRunner)
ind = 0
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
for conf in configfiles:
pathconf = folder + "/"+ EbinPath + str(Nbin) +"/" + conf
Newconfig = get_config(pathconf)
cmd = enricodir+"/enrico/RunGTlike.py "+pathconf
if Newconfig['Submit'] == 'no' : #run directly
os.system(cmd)
else : #submit a job to a cluster
prefix = Newconfig['out'] + "/"+ EbinPath + str(ind)
scriptname = prefix + "_Script.sh"
JobLog = prefix + "_Job.log"
JobName = (Newconfig['target']['name'] + "_" +
Newconfig['analysis']['likelihood'] +
"_Ebin_" + str(ind) + "_" + Newconfig['file']['tag'])
call(cmd, enricodir, fermidir, scriptname, JobLog, JobName)# submition
ind+=1
def _MakeLC(self, Path=LightcurvePath):
'''Main function of the Lightcurve script. Read the config file and run the gtlike analysis'''
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
self.PrepareLC(
self.config['LightCurve']['MakeConfFile']) #Get the config file
for i in xrange(self.Nbin):
if self.submit == 'yes':
cmd = "enrico_sed " + self.configfile[i]
scriptname = self.LCfolder + "LC_Script_" + str(i) + ".sh"
JobLog = self.LCfolder + "LC_Job_" + str(i) + ".log"
JobName = (self.config['target']['name'] + "_" +
self.config['analysis']['likelihood'] + "_LC_" +
self.config['file']['tag']) + "_" + str(i) + ".log"
call(cmd, enricodir, fermidir, scriptname, JobLog,
JobName) #Submit the job
else:
run(self.configfile[i]) #run in command line
def _MakeLC(self,Path=LightcurvePath) :
#import gc
import os
#gc.enable()
'''Main function of the Lightcurve script. Read the config file and run the gtlike analysis'''
enricodir = environ.DIRS.get('ENRICO_DIR')
fermidir = environ.DIRS.get('FERMI_DIR')
self.PrepareLC(self.config['LightCurve']['MakeConfFile'])#Get the config file
for i in xrange(self.Nbin):
#gc.collect()
cmd = str("enrico_sed %s && enrico_plot_lc %s" %(self.configfile[i], self.parent_filename))
if self.submit == 'yes':
scriptname = self.LCfolder+"LC_Script_"+str(i)+".sh"
JobLog = self.LCfolder+"LC_Job_"+str(i)+".log"
JobName = (self.config['target']['name'] + "_" +
self.config['analysis']['likelihood'] +
"_LC_" + self.config['file']['tag'])+"_"+str(i)+".log"
call(cmd,enricodir,fermidir,scriptname,JobLog,JobName)#Submit the job
else :
os.system(cmd)
