def get(self):
# get the organisms, maps, and models
response = yield gen.Task(AsyncHTTPClient().fetch, get_url('server_index', protocol='http'))
if response.code == 200 and response.body is not None:
server_index = response.body.decode('utf-8')
else:
server_index = json.dumps(None)
# get the cached maps and models
index = local_index()
# render the template
template = env.get_template('index.html')
data = template.render(d3=get_url('d3', 'local'),
boot_css=get_url('boot_css', 'local'),
index_css=get_url('index_css', 'local'),
favicon=get_url('favicon', 'local'),
logo=get_url('logo', 'local'),
documentation=get_url('documentation', protocol='https'),
github=get_url('github'),
github_releases=get_url('github_releases'),
index_js=get_url('index_js', 'local'),
index_gh_pages_js=get_url('index_gh_pages_js', 'local'),
map_download=get_url('map_download', 'local'),
# server_index_url=
server_index=server_index,
local_index=json.dumps(index),
can_dev=CAN_DEV,
can_dev_js=json.dumps(CAN_DEV),
version=__version__,
web_version=False)
self.set_header("Content-Type", "text/html")
self.serve(data)
def get(self):
# get the organisms, maps, and models
response = yield gen.Task(AsyncHTTPClient().fetch,
get_url('server_index', protocol='http'))
if response.code == 200 and response.body is not None:
server_index_json = response.body.decode('utf-8')
else:
server_index_json = None
# get the cached maps and models
index = local_index()
# render the template
template = env.get_template('homepage.html')
data = template.render(
d3=get_url('d3', 'local'),
boot_css=get_url('boot_css', 'local'),
homepage_css=get_url('homepage_css', 'local'),
favicon=get_url('favicon', 'local'),
logo=get_url('logo', 'local'),
documentation=get_url('documentation', protocol='https'),
github=get_url('github'),
github_releases=get_url('github_releases'),
homepage_js=get_url('homepage_js', 'local'),
map_download_url=get_url('map_download', 'local'),
server_index_json=escape_json_or_null(server_index_json),
local_index_json=json_dump_and_escape(index),
version=__version__,
web_version=False)
self.set_header("Content-Type", "text/html")
self.serve(data)
def get(self):
# get the organisms, maps, and models
response = yield gen.Task(AsyncHTTPClient().fetch, get_url('server_index', protocol='http'))
if response.code == 200 and response.body is not None:
server_index_json = response.body.decode('utf-8')
else:
server_index_json = None
# get the cached maps and models
index = local_index()
# render the template
template = env.get_template('homepage.html')
data = template.render(d3=get_url('d3', 'local'),
boot_css=get_url('boot_css', 'local'),
homepage_css=get_url('homepage_css', 'local'),
favicon=get_url('favicon', 'local'),
logo=get_url('logo', 'local'),
documentation=get_url('documentation', protocol='https'),
github=get_url('github'),
github_releases=get_url('github_releases'),
homepage_js=get_url('homepage_js', 'local'),
map_download_url=get_url('map_download', 'local'),
server_index_json=escape_json_or_null(server_index_json),
local_index_json=json_dump_and_escape(index),
version=__version__,
web_version=False)
self.set_header("Content-Type", "text/html")
self.serve(data)
def test_local_index(tmpdir, request):
maps = tmpdir.mkdir('maps')
maps.mkdir('Escherichia coli').join('iJO1366.Central metabolism.json').write('temp')
# ignore these
maps.join('ignore_md.json').write('ignore')
tmpdir.mkdir('models').mkdir('Escherichia coli').join('iJO1366.json').write('temp')
assert local_index(str(tmpdir)) == { 'maps': [ { 'organism': 'Escherichia coli',
'map_name': 'iJO1366.Central metabolism' } ],
'models': [ { 'organism': 'Escherichia coli',
'model_name': 'iJO1366' } ] }
def fin():
tmpdir.remove()
request.addfinalizer(fin)
def test_local_index(tmpdir, request):
maps = tmpdir.mkdir('maps')
maps.mkdir('Escherichia coli').join('iJO1366.Central metabolism.json').write('temp')
# ignore these
maps.join('ignore_md.json').write('ignore')
tmpdir.mkdir('models').mkdir('Escherichia coli').join('iJO1366.json').write('temp')
assert local_index(str(tmpdir)) == { 'maps': [ { 'organism': 'Escherichia coli',
'map_name': 'iJO1366.Central metabolism' } ],
'models': [ { 'organism': 'Escherichia coli',
'model_name': 'iJO1366' } ] }
def fin():
tmpdir.remove()
request.addfinalizer(fin)
def test_local_index(tmpdir, request):
maps = tmpdir.mkdir("maps")
maps.mkdir("Escherichia coli").join("iJO1366.Central metabolism.json").write("temp")
# ignore these
maps.join("ignore_md.json").write("ignore")
tmpdir.mkdir("models").mkdir("Escherichia coli").join("iJO1366.json").write("temp")
assert local_index(str(tmpdir)) == {
"maps": [{"organism": "Escherichia coli", "map_name": "iJO1366.Central metabolism"}],
"models": [{"organism": "Escherichia coli", "model_name": "iJO1366"}],
}
def fin():
tmpdir.remove()
request.addfinalizer(fin)
