def evaluate(gpu_device, model, dataloader, nb_classes, name='tra_similar.jpg'):
# calculate embeddings with model, also get labels (non-batch-wise)
X, T = predict_batchwise(gpu_device, model, dataloader)
#X = F.normalize(X, p=2, dim=1)
# calculate NMI with kmeans clustering
nmi=0.0
if X.shape[0]<10000:
'''
nmi = evaluation.calc_normalized_mutual_information(
T,
evaluation.cluster_by_kmeans(
X, nb_classes
))
'''
nmi = 1.0
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(X, T, 8)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
return nmi, recall
else:
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(X, T, 1000)
# calculate recall @ 1, 10, 100, 1000
recall = []
for k in [1, 10, 100, 1000]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
return nmi, recall
def evaluate(model,
dataloader,
nb_classes,
net_type='bn_inception',
dataroot='CARS'):
model_is_training = model.training
model.eval()
# calculate embeddings with model, also get labels (non-batch-wise)
X, T = predict_batchwise(model, dataloader, net_type)
if dataroot != 'Stanford':
# calculate NMI with kmeans clustering
nmi = evaluation.calc_normalized_mutual_information(
T, evaluation.cluster_by_kmeans(X, nb_classes))
logging.info("NMI: {:.3f}".format(nmi * 100))
else:
nmi = -1
recall = []
if dataroot != 'Stanford':
Y = evaluation.assign_by_euclidian_at_k(X, T, 8)
which_nearest_neighbors = [1, 2, 4, 8]
else:
Y = evaluation.assign_by_euclidian_at_k(X, T, 1000)
which_nearest_neighbors = [1, 10, 100, 1000]
for k in which_nearest_neighbors:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
logging.info("R@{} : {:.3f}".format(k, 100 * r_at_k))
model.train(model_is_training) # revert to previous training state
return nmi, recall
def evaluate(model, dataloader, nb_classes):
model_is_training = model.training
model.eval()
# calculate embeddings with model, also get labels (non-batch-wise)
X, T = predict_batchwise(model, dataloader)
# calculate NMI with kmeans clustering
nmi = evaluation.calc_normalized_mutual_information(
T,
evaluation.cluster_by_kmeans(
X, nb_classes
)
)
logging.info("NMI: {:.3f}".format(nmi * 100))
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(X, T, 8)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
logging.info("R@{} : {:.3f}".format(k, 100 * r_at_k))
model.train(model_is_training) # revert to previous training state
return nmi, recall
def evaluate(model, dataloader, with_nmi = True):
nb_classes = dataloader.dataset.nb_classes()
# calculate embeddings with model and get targets
X, T, *_ = predict_batchwise(model, dataloader)
if with_nmi:
# calculate NMI with kmeans clustering
nmi = evaluation.calc_normalized_mutual_information(
T,
evaluation.cluster_by_kmeans(
X, nb_classes
)
)
logging.info("NMI: {:.3f}".format(nmi * 100))
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(X, T, 8)
Y = torch.from_numpy(Y)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
logging.info("R@{} : {:.3f}".format(k, 100 * r_at_k))
if with_nmi:
return recall, nmi
else:
return recall
def evaluate(model, dataloader=None, fc7=None, batch=None, calc_nmi=False):
nb_classes = model.nb_classes
model_is_training = model.training
model.eval()
# calculate embeddings with model, also get labels
emb, labels = predict_batchwise(model,
dataloader=dataloader,
fc7=fc7,
batch=batch)
nmi = None
if dataloader is not None and calc_nmi:
nmi = evaluation.calc_normalized_mutual_information(
labels, evaluation.cluster_by_kmeans(emb, nb_classes))
recall = []
# rank the nearest neighbors for each input
k_pred_labels = evaluation.assign_by_euclidian_at_k(emb, labels, 1000)
if batch is None:
which_nearest_neighbors = [1, 10, 100, 1000]
else:
which_nearest_neighbors = [1]
for k in which_nearest_neighbors:
r_at_k = evaluation.calc_recall_at_k(labels, k_pred_labels, k)
recall.append(r_at_k)
logging.info("R@{} : {:.3f}".format(k, 100 * r_at_k))
if model_is_training:
model.train() # revert to previous training state
return recall, nmi
def on_epoch_end(self, epoch, logs={}):
if epoch % self.interval == 0:
get_intermediate_layer_output = backend.function(
[self.model.input],
[self.model.get_layer("predictions").output])
y_given = []
y_embedding = []
nb_classes = 0
print("Before getting validation samples:")
print(datetime.datetime.now().time())
for i in range(128):
X_val_temp, y_val_temp = self.validation_data.next()
nb_classes = y_val_temp.shape[1]
y_given.append(y_val_temp)
y_embedding_temp = get_intermediate_layer_output([X_val_temp
])[0]
y_embedding.append(y_embedding_temp)
print("After getting validation samples:")
print(datetime.datetime.now().time())
y_embedding = np.concatenate(y_embedding, axis=0)
y_given = np.concatenate(y_given, axis=0)
y_given_class_order = np.argsort(y_given, axis=-1)
y_given_class = np.transpose(y_given_class_order)[-1]
nmi = evaluation.calc_normalized_mutual_information(
y_given_class,
evaluation.cluster_by_kmeans(y_embedding, nb_classes))
logging.info("NMI: {:.3f}".format(nmi * 100))
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(y_embedding, y_given_class,
8)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(y_given_class, Y, k)
recall.append(r_at_k)
logging.info("R@{} : {:.3f}".format(k, 100 * r_at_k))
return nmi, recall
def get_recall_results2(model, dataloader):
eval_time = time.time()
nb_classes = dataloader.dataset.nb_classes()
# calculate embeddings with model and get targets
X, T, I = predict_batchwise(model, dataloader)
# get predictions by assigning nearest 8 neighbors with euclidian
max_dist = 1
Y = evaluation.assign_by_euclidian_at_k(X, T, max_dist)
Y = torch.from_numpy(Y)
recall_results = []
for t, y in zip(T, Y):
recall_results.append(t in y[:1])
return recall_results, X, T, I
def evaluate(model, dataloader, eval_nmi=True, recall_list=[1, 2, 4, 8]):
eval_time = time.time()
nb_classes = dataloader.dataset.nb_classes()
# calculate embeddings with model and get targets
X, T, *_ = predict_batchwise(model, dataloader)
print('done collecting prediction')
#eval_time = time.time() - eval_time
#logging.info('Eval time: %.2f' % eval_time)
if eval_nmi:
# calculate NMI with kmeans clustering
nmi = evaluation.calc_normalized_mutual_information(
T, evaluation.cluster_by_kmeans(X, nb_classes))
else:
nmi = 1
logging.info("NMI: {:.3f}".format(nmi * 100))
# get predictions by assigning nearest 8 neighbors with euclidian
max_dist = max(recall_list)
Y = evaluation.assign_by_euclidian_at_k(X, T, max_dist)
Y = torch.from_numpy(Y)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in recall_list:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
logging.info("R@{} : {:.3f}".format(k, 100 * r_at_k))
chmean = (2 * nmi * recall[0]) / (nmi + recall[0])
logging.info("hmean: %s", str(chmean))
eval_time = time.time() - eval_time
logging.info('Eval time: %.2f' % eval_time)
return nmi, recall
def evaluate(model, dataloader, nb_classes):
model_is_training = model.training
model.eval()
# calculate embeddings with model, also get labels (non-batch-wise)
X, T = predict_batchwise(model, dataloader)
# calculate NMI with kmeans clustering
nmi = evaluation.calc_normalized_mutual_information(
T, evaluation.cluster_by_kmeans(X, nb_classes))
logging.info("NMI: {:.3f}".format(nmi * 100))
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(X, T, 8)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
logging.info("R@{} : {:.3f}".format(k, 100 * r_at_k))
model.train(model_is_training) # revert to previous training state
return nmi, recall
def evaluate(gpu_device,
model,
dataloader,
nb_classes,
name='tra_similar.jpg'):
# calculate embeddings with model, also get labels (non-batch-wise)
X4, X5, X52, T = predict_batchwise(gpu_device, model, dataloader)
#import pdb
#pdb.set_trace()
X = torch.cat([X4, X5, X52], dim=1)
#X = X4
#X = F.normalize(X, p=2, dim=1)
# calculate NMI with kmeans clustering
nmi = 0.0
if X.shape[0] < 10000:
'''
nmi = evaluation.calc_normalized_mutual_information(
T,
evaluation.cluster_by_kmeans(
X, nb_classes
))
'''
nmi = 1.0
'''
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(X4, T, 8)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
Y = evaluation.assign_by_euclidian_at_k(X5, T, 8)
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
'''
#Y = evaluation.assign_by_euclidian_at_k(X, T, 8)
Y, indices = evaluation.assign_by_euclidian_at_k_hist(X, T, 8, name)
'''
result = open('result.txt', 'w')
imgs = dataloader.dataset.imgs
for i in range(indices.shape[0]):
result.write('query:'+imgs[i][0]+'\n')
for j in indices[i][:4]:
result.write(imgs[j][0]+'\n')
result.write('\n')
result.close()
import pdb;pdb.set_trace()
'''
# calculate recall @ 1, 2, 4, 8
recall = []
for k in [1, 2, 4, 8]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
return nmi, recall
else:
# get predictions by assigning nearest 8 neighbors with euclidian
Y = evaluation.assign_by_euclidian_at_k(X, T, 1000)
# calculate recall @ 1, 10, 100, 1000
recall = []
for k in [1, 10, 100, 1000]:
r_at_k = evaluation.calc_recall_at_k(T, Y, k)
recall.append(r_at_k)
return nmi, recall
def validation_epoch_end(self, outputs: Dict[str, Any]) -> None:
"""Compute metrics on the full validation set.
Args:
outputs (Dict[str, Any]): Dict of values collected over each batch put through model.eval()(..)
"""
val_Xs = torch.cat([h["Xs"] for h in outputs])
val_Ts = torch.cat([h["Ts"] for h in outputs])
val_indexes = torch.cat([h["index"] for h in outputs])
Y = assign_by_euclidian_at_k(val_Xs.cpu(), val_Ts.cpu(), 8)
Y = torch.from_numpy(Y)
# Return early when PL is running the sanity check.
if self.trainer.running_sanity_check:
return
# Compute and Log R@k
recall = []
logs = {}
for k in [1, 2, 4, 8]:
r_at_k = 100 * calc_recall_at_k(val_Ts.cpu(), Y, k)
recall.append(r_at_k)
logs[f"val_R@{k}"] = r_at_k
self.log_dict(logs)
# Compute and log NMI
nmi = 100 * calc_normalized_mutual_information(
val_Ts.cpu(), cluster_by_kmeans(val_Xs.cpu(), self.hparams.num_classes)
)
self.log_dict({"NMI": nmi})
# Inspect the embedding space in 2 and 3 dimensions.
if 2 in self.hparams.vis_dim:
pca = PCA(2)
projected = pca.fit_transform(val_Xs.cpu())
proxies = pca.transform(self.proxies.detach().cpu())
fig_embedded_data = go.Figure()
for cls_idx, cls_name in enumerate(self.val_dataset.classes):
x_s = [
o
for i, o in enumerate(projected[:, 0])
if self.val_dataset.get_label_description(Y[i, 0]) == cls_name
]
y_s = [
o
for i, o in enumerate(projected[:, 1])
if self.val_dataset.get_label_description(Y[i, 0]) == cls_name
]
marker_color = colors_by_name[cls_idx % len(colors_by_name)]
fig_embedded_data.add_scatter(
x=x_s,
y=y_s,
marker_color=marker_color,
text=cls_name,
name=cls_name,
mode="markers",
)
wandb.log({"Embedding of Validation Dataset 2D": fig_embedded_data})
fig_embedded_proxies = go.Figure()
for cls_name, x_y in zip(self.val_dataset.classes, proxies):
x_s = [
o
for i, o in enumerate(proxies[:, 0])
if self.val_dataset.get_label_description(Y[i, 0]) == cls_name
]
y_s = [
o
for i, o in enumerate(proxies[:, 1])
if self.val_dataset.get_label_description(Y[i, 0]) == cls_name
]
marker_color = colors_by_name[
self.val_dataset.classes.index(cls_name) % len(colors_by_name)
]
fig_embedded_proxies.add_scatter(
x=[x_y[0]],
y=[x_y[1]],
marker_color=marker_color,
text=cls_name,
name=cls_name,
mode="markers",
)
wandb.log(
{"Embedding of Proxies (on validation data) 2D": fig_embedded_proxies}
)
if 3 in self.hparams.vis_dim:
pca = PCA(3)
projected = pca.fit_transform(val_Xs.cpu())
proxies = pca.transform(self.proxies.detach().cpu())
fig_embedded_data = go.Figure()
for cls_idx, cls_name in enumerate(self.val_dataset.classes):
x_s = [
o
for i, o in enumerate(projected[:, 0])
if self.val_dataset.get_label_description(Y[i, 0]) == cls_name
]
y_s = [
o
for i, o in enumerate(projected[:, 1])
if self.val_dataset.get_label_description(Y[i, 0]) == cls_name
]
z_s = [
o
for i, o in enumerate(projected[:, 2])
if self.val_dataset.get_label_description(Y[i, 0]) == cls_name
]
marker_color = colors_by_name[cls_idx % len(colors_by_name)]
fig_embedded_data.add_scatter3d(
x=x_s,
y=y_s,
z=z_s,
marker_color=marker_color,
text=cls_name,
name=cls_name,
mode="markers",
)
wandb.log({"Embedding of Validation Dataset 3D": fig_embedded_data})
fig_embedded_proxies = go.Figure()
for cls_name, x_y_z in zip(self.val_dataset.classes, proxies):
marker_color = colors_by_name[
self.val_dataset.classes.index(cls_name) % len(colors_by_name)
]
fig_embedded_proxies.add_scatter3d(
x=[x_y_z[0]],
y=[x_y_z[1]],
z=[x_y_z[2]],
marker_color=marker_color,
text=cls_name,
name=cls_name,
mode="markers",
)
wandb.log(
{"Embedding of Proxies (on validation data) 3D": fig_embedded_proxies}
)
cm = confusion_matrix(
y_true=val_Ts.cpu().numpy(),
y_pred=Y[:, 0].cpu().numpy(),
labels=[o for o in range(0, len(self.val_dataset.classes))],
)
fig_cm = ff.create_annotated_heatmap(
cm,
x=self.val_dataset.classes,
y=self.val_dataset.classes,
annotation_text=cm.astype(str),
colorscale="Viridis",
)
wandb.log({"Confusion Matrix": fig_cm})
# Log a query and top 4 selction
image_dict = {}
top_k_indices = torch.cdist(val_Xs, val_Xs).topk(5, largest=False).indices
max_idx = len(top_k_indices) - 1
for i, example_result in enumerate(
top_k_indices[[randint(0, max_idx) for _ in range(0, 5)]]
):
image_dict[f"global step {self.global_step} example: {i}"] = [
wandb.Image(
Image.open(
self.val_dataset.im_paths[val_indexes[example_result[0]]]
),
caption=f"query: {self.val_dataset.get_label_description(self.val_dataset.get_label(val_indexes[example_result[0]]))}",
)
]
image_dict[f"global step {self.global_step} example: {i}"].extend(
[
wandb.Image(
Image.open(self.val_dataset.im_paths[val_indexes[idx]]),
caption=f"retrival:({rank}) {self.val_dataset.get_label_description(self.val_dataset.get_label(val_indexes[idx]))}",
)
for rank, idx in enumerate(example_result[1:])
]
)
self.logger.experiment.log(image_dict)
# Since validation set samples are iid I prefer looking at a histogram of validation losses.
wandb.log(
{f"val_loss_hist": wandb.Histogram([[h["val_loss"] for h in outputs]])}
)
def update(self, fc7, batch):
emb, labels = predict_batchwise(None, fc7=fc7, batch=batch)
k_pred_labels = evaluation.assign_by_euclidian_at_k(emb, labels, 1000)
self.recall += torch.tensor(
evaluation.calc_recall_at_k(labels, k_pred_labels, k=1))
self.total += 1
