def test_not_determine_when_wt_mis_generate_mut_site(self):
p = Pe()
p.name = 'TaqI'
p.clean_recognition_sequence = 'tcga'
p.save()
s = Snp('aaaaaat[g/t]gaaaaa')
print(Pe.objects.all().can_determine_snp(s, 1))
def test_not_determine_with_mismatches_in_snp(self):
p = Pe()
p.name = 'TaqI'
p.clean_recognition_sequence = 'tcga'
p.save()
s = Snp('aaaaaat[g/t]gaaaaa')
print(Pe.objects.all().can_determine_snp(s, 1))
def test_determine_with_two_mismatches(self):
p = Pe()
p.name = 'TaqI'
p.clean_recognition_sequence = 'tcga'
p.save()
s = Snp('aaaaaaa[tc/c]aaaaaa')
print(Pe.objects.all().can_determine_snp(s, 2))
def test_determine_with_one_mismatch(self):
p = Pe()
p.name = 'TaqI'
p.clean_recognition_sequence = 'tcga'
p.save()
s = Snp('aaaaaaa[tc/c]gaaaaa')
print(Pe.objects.can_determine_snp(s, 1))
def test_3(self):
p = Pe()
p.name = 'TaqI'
p.clean_recognition_sequence = 'tccy'
p.save()
s = Snp('aaaaaat[c/t]cataaa')
print("{} \n{}".format(self._testMethodName,
Pe.objects.can_determine_snp(s, 1)))
def test_determine_without_mismatches_IUPAC(self):
p = Pe()
p.name = 'TaqI'
p.clean_recognition_sequence = 'tcga'
p.save()
s = Snp('aaaaaatycgaaaaa')
print("{} \n{}".format(self._testMethodName,
Pe.objects.can_determine_snp(s, 0)))
