def test_make_jackknife_tree_html_file(self):
"""The HTML file is generated in the right place"""
self._paths_to_clean_up = [self.output_file,
path.join(self.tmp_dir, 'overlib.js')]
make_jackknife_tree_html_file(self.jack_tree, self.support,
self.trans_values, self.mapping_data, self.output_file,
self.tmp_dir)
self.assertTrue(path.exists(self.output_file),
'The html file was not created in the appropiate location')
self.assertTrue(path.exists(path.join(self.tmp_dir, 'overlib.js')),
'The javascript file was not moved in the appropiate location')
(0.7, 0.9): ("#82FF8B", "70-90%"),
(0.9, 0.999): ("#F8FE83", "90-99.9%"),
(0.999, None): ("#FF8582", "> 99.9%")
}
if __name__ == '__main__':
option_parser, opts, args = parse_command_line_parameters(**script_info)
support_fp = opts.support_fp
tree_fp = opts.tree_fp
mapping_fp = opts.mapping_fp
html_fp = opts.output_html_fp
output_dir = opts.output_dir
# Create output directory
try:
os.mkdir(output_dir)
except OSError:
pass
# Parse jackknife support file
support = parse_jackknife_support_file(open(support_fp, 'U'))
# Parse jackknife named nodes tree file
tree = parse_newick(open(tree_fp, 'U'), PhyloNode)
# Parse mapping file
mapping_data = parse_mapping_file_to_dict(open(mapping_fp, 'U'))
# Generate the html file
make_jackknife_tree_html_file(tree, support, DICT_TRANS_VALUES,
mapping_data, html_fp, output_dir)
