def test_delete(self, owned):
if owned:
tablesess = self.sess
else:
user2 = self.create_user_same_group()
tablesess = self.create_client_session(user2)
iid1 = unwrap(TableStoreHelper.create_image(self.sess).getId())
iid2 = unwrap(TableStoreHelper.create_image(self.sess).getId())
store = FeatureTable(
tablesess, self.name, self.ft_space, self.ann_space)
store.new_table([('Long', 'id')], ['x'])
ofile = store.get_table().getOriginalFile()
link1 = store.create_file_annotation(
'Image', iid1, self.ann_space, ofile)
link2 = store.create_file_annotation(
'Image', iid2, self.ann_space, ofile)
if not owned:
store.close()
# Reopen the store with a different session
store = FeatureTable(
self.sess, self.name, self.ft_space, self.ann_space)
store.open_table(unwrap(ofile.getId()))
def get(obj):
# Fetch the latest copy of an object
return self.sess.getQueryService().find(
'omero.model.%s' % obj.__class__.__name__, unwrap(obj.getId()))
assert get(link1) is not None
assert get(link1.getParent()) is not None
assert get(link1.getChild())
assert get(link1.getChild().getFile())
assert get(link2)
assert get(link2.getParent())
assert get(link2.getChild())
assert get(link2.getChild().getFile())
if owned:
store.delete()
assert get(link1) is None
assert get(link1.getParent())
assert get(link1.getChild()) is None
assert get(link1.getChild().getFile()) is None
assert get(link2) is None
assert get(link2.getParent())
assert get(link2.getChild()) is None
assert get(link2.getChild().getFile()) is None
else:
with pytest.raises(
OmeroTablesFeatureStore.FeaturePermissionException):
store.delete()
store.close()
def test_create_file_annotation(self):
tid, tcols, meta, ftnames = TableStoreHelper.create_table(
self.sess, self.ft_space, self.name, [1], 'multi', False)
imageid = unwrap(TableStoreHelper.create_image(self.sess).getId())
ofile = self.sess.getQueryService().get(
'omero.model.OriginalFile', tid)
store = FeatureTable(
self.sess, self.name, self.ft_space, self.ann_space)
assert store._file_annotation_exists(
'Image', imageid, self.ann_space, tid) == []
link = store.create_file_annotation(
'Image', imageid, self.ann_space, ofile)
p = link.getParent()
c = link.getChild()
assert isinstance(p, omero.model.Image)
assert isinstance(c, omero.model.FileAnnotation)
assert unwrap(p.getId()) == imageid
assert unwrap(c.getFile().getId()) == tid
links = store._file_annotation_exists(
'Image', imageid, self.ann_space, tid)
assert len(links) == 1
assert links[0].__class__ == link.__class__ and links[0].id == link.id
store.close()
def test_delete(self, owned):
if owned:
tablesess = self.sess
else:
user2 = self.create_user_same_group()
tablesess = self.create_client_session(user2)
iid1 = unwrap(TableStoreHelper.create_image(self.sess).getId())
iid2 = unwrap(TableStoreHelper.create_image(self.sess).getId())
store = FeatureTable(tablesess, self.name, self.ft_space, self.ann_space)
store.new_table([("Long", "id")], ["x"])
ofile = store.get_table().getOriginalFile()
link1 = store.create_file_annotation("Image", iid1, self.ann_space, ofile)
link2 = store.create_file_annotation("Image", iid2, self.ann_space, ofile)
if not owned:
store.close()
# Reopen the store with a different session
store = FeatureTable(self.sess, self.name, self.ft_space, self.ann_space)
store.open_table(unwrap(ofile.getId()))
def get(obj):
# Fetch the latest copy of an object
return self.sess.getQueryService().find("omero.model.%s" % obj.__class__.__name__, unwrap(obj.getId()))
assert get(link1) is not None
assert get(link1.getParent()) is not None
assert get(link1.getChild())
assert get(link1.getChild().getFile())
assert get(link2)
assert get(link2.getParent())
assert get(link2.getChild())
assert get(link2.getChild().getFile())
if owned:
store.delete()
assert get(link1) is None
assert get(link1.getParent())
assert get(link1.getChild()) is None
assert get(link1.getChild().getFile()) is None
assert get(link2) is None
assert get(link2.getParent())
assert get(link2.getChild()) is None
assert get(link2.getChild().getFile()) is None
else:
with pytest.raises(OmeroTablesFeatureStore.FeaturePermissionException):
store.delete()
store.close()
def test_create_file_annotation(self):
tid, tcols, meta, ftnames = TableStoreHelper.create_table(
self.sess, self.ft_space, self.name, [1], "multi", False
)
imageid = unwrap(TableStoreHelper.create_image(self.sess).getId())
ofile = self.sess.getQueryService().get("omero.model.OriginalFile", tid)
store = FeatureTable(self.sess, self.name, self.ft_space, self.ann_space)
assert store._file_annotation_exists("Image", imageid, self.ann_space, tid) == []
link = store.create_file_annotation("Image", imageid, self.ann_space, ofile)
p = link.getParent()
c = link.getChild()
assert isinstance(p, omero.model.Image)
assert isinstance(c, omero.model.FileAnnotation)
assert unwrap(p.getId()) == imageid
assert unwrap(c.getFile().getId()) == tid
links = store._file_annotation_exists("Image", imageid, self.ann_space, tid)
assert len(links) == 1
assert links[0].__class__ == link.__class__ and links[0].id == link.id
store.close()
