Esempio n. 1
0
    def test_find_rois_for_plane(self, projection):
        def getIds(objs, robject=True):
            if robject:
                return sorted(unwrap(o.getId()) for o in objs)
            return sorted(objs)

        im = self.create_image()
        iid = unwrap(im.getId())

        r1 = utils.create_roi_for_plane(
            self.sess, unwrap(im.getId()), 2, 3, 4, robject=True)
        r2 = utils.create_roi_for_plane(
            self.sess, unwrap(im.getId()), 2, 4, 6, robject=True)

        r3 = utils.create_roi_for_plane(
            self.sess, unwrap(im.getId()), 2, 4, 8, robject=True)
        r3.getShape(0).setWidth(rdouble(1))
        r3 = self.sess.getUpdateService().saveAndReturnObject(r3)

        r4 = utils.create_roi_for_plane(
            self.sess, unwrap(im.getId()), 2, 4, 8, robject=True)
        r4.addShape(omero.model.RectI())
        r4 = self.sess.getUpdateService().saveAndReturnObject(r4)

        rs = utils.find_rois_for_plane(self.sess, iid=iid, z=1000)
        assert rs == []

        rs = utils.find_rois_for_plane(
            self.sess, iid=iid, fullplane=True, projection=projection)
        assert getIds(rs, not projection) == getIds([r1, r2])

        rs = utils.find_rois_for_plane(
            self.sess, iid=iid, singleshape=False, projection=projection)
        assert getIds(rs, not projection) == getIds([r1, r2, r4])

        rs = utils.find_rois_for_plane(
            self.sess, iid=iid, fullplane=False, projection=projection)
        assert getIds(rs, not projection) == getIds([r1, r2, r3])

        rs = utils.find_rois_for_plane(
            self.sess, iid=iid, c=4, fullplane=False, singleshape=False,
            projection=projection)
        assert getIds(rs, not projection) == getIds([r2, r3, r4])
Esempio n. 2
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    def test_create_roi_for_plane(self, robject):
        im = self.create_image()

        r = utils.create_roi_for_plane(
            self.sess, unwrap(im.getId()), 2, 4, 6, robject=robject)
        if not robject:
            p = omero.sys.ParametersI()
            p.addId(r)
            r = self.sess.getQueryService().findByQuery(
                'FROM Roi r JOIN FETCH r.shapes where r.id=:id', p)

        assert r.getImage().getId() == im.getId()
        assert r.sizeOfShapes() == 1

        s = r.getShape(0)
        assert unwrap(s.getX()) == 0
        assert unwrap(s.getY()) == 0
        assert unwrap(s.getWidth()) == 4
        assert unwrap(s.getHeight()) == 5
        assert unwrap(s.getTheZ()) == 2
        assert unwrap(s.getTheC()) == 4
        assert unwrap(s.getTheT()) == 6