def copy_concat_file(
cell,
mode,
new_home="/sciclone/data10/jberwald/wyss/concat_files/",
old_home="/sciclone/data10/jberwald/wyss/data/Cells_Jesse/",
):
"""
Copy the concatenated fft files (at a given mode) to a single
directory. Rename with cell and mode appended in the process.
Files copied to <new_home>/cell/r<mode>_betti/all_pickle.pkl
"""
if not cell.endswith("/"):
cell += "/"
# make a new directory to copy file to
F.make_dir(new_home + cell)
mode_str = F.mode2str(mode)
r_mode = "r" + mode_str + "_betti/"
new_fpath = new_home + cell + r_mode
F.make_dir(new_fpath)
# now copy from old_home -> new_home
if "old" in cell:
cell_type = "Old/"
else:
cell_type = "New/"
fft_path = "fft_frames/normed_frames/"
fpath = old_home + cell_type + "frames/" + cell + fft_path + r_mode + "all_frames.pkl"
shutil.copy(fpath, new_fpath)
modes = np.linspace(0, 1, 21)
new_fdir = "/sciclone/home04/jberwald/data10/wyss/data/Cells_Jesse/New/frames/"
old_fdir = "/sciclone/home04/jberwald/data10/wyss/data/Cells_Jesse/Old/frames/"
new_cells = ["new_110125/"] # , 'new_130125/', 'new_140125/', 'new_40125/', 'new_50125/' ] # 'new_110125/',
old_cells = ["old_100125/", "old_120125/", "old_50125/", "old_90125/"] # ,
subdir = "fft_frames/normed_frames/"
print "concatenating cell data..."
for cell in new_cells:
print "cells", cell
# concat_files( new_fdir _ cell )
for mode in modes:
str_mode = F.mode2str(mode)
# thresh_dir = 'r' + str_mode + '/'
betti_dir = "r" + str_mode + "_betti/"
# first the threshold files
# cell_dir = new_fdir + cell + subdir + thresh_dir
# concat_files( cell_dir )
# now the betti files
cell_dir = new_fdir + cell + subdir + betti_dir
concat_files(cell_dir)
# for cell in old_cells:
# print "cells", cell
# #concat_files( new_fdir _ cell )
# for mode in modes:
# #thresh_dir = 'r' + str_mode + '/'
# str_mode = F.mode2str( mode )