def setup_module():
settings._reset()
settings.configure(CONFIG)
pymodm.connect(settings.PYMODM_CONFIG["URI"])
# Clear the database
if GENERATE_FIXTURES:
server, db_name = settings.PYMODM_CONFIG["URI"].rsplit("/", 1)
client = pymongo.MongoClient(server)
client.drop_database(db_name)
generate_examples(False)
else:
print("Skipping Fixtures")
if (ObjectId.is_valid(resource.id)):
Item._id = resource.id
Item.save()
count += 1
print(f'{count} / {total} {cls_name}' + 20 * ' ', end='\r')
print('Fixtures generated' + 20 * ' ')
return examples
if __name__ == "__main__":
import sys
wait = sys.argv[-1] == '-w'
import pymongo
import pymodm
from fhirbug.config import settings, import_models
settings.configure('settings')
server, db_name = settings.PYMODM_CONFIG["URI"].rsplit("/", 1)
while True:
try:
client = pymongo.MongoClient(server)
client.server_info()
except pymongo.errors.ServerSelectionTimeoutError:
if not wait:
sys.exit(1)
else:
break
pymodm.connect(settings.PYMODM_CONFIG["URI"])
# Clear the database
client.drop_database(db_name)
generate_examples(False)
import unittest
from unittest.mock import Mock, patch, call
from types import SimpleNamespace
from fhirbug.config import settings
if settings.is_configured():
settings._reset()
settings.configure({
"DB_BACKEND": "SQLAlchemy",
"SQLALCHEMY_CONFIG": {
"URI": "sqlite:///memory"
}
})
from . import models
from fhirbug.constants import AUDIT_SUCCESS, AUDIT_MINOR_FAILURE
from fhirbug.Fhir.resources import Patient, Observation
from fhirbug.exceptions import (
AuthorizationError,
DoesNotExistError,
MappingValidationError,
)
from fhirbug.models.mixins import (
FhirAbstractBaseMixin,
FhirBaseModelMixin,
get_pagination_info,
)
class TestAbstractBaseMixin(unittest.TestCase):
def test_get_resource_cls(self):
cls = models.BaseMixinModel._get_resource_cls()
import unittest
from types import SimpleNamespace
from unittest.mock import call, patch, Mock
from fhirbug.config import settings
from fhirbug.exceptions import UnsupportedOperationError, MappingValidationError, MappingException
settings._reset()
settings.configure({
"DB_BACKEND": "SQLAlchemy",
"SQLALCHEMY_CONFIG": {
"URI": "sqlite:///memory"
},
'MODELS_PATH': 'tests.models'
})
from . import models
class TestAttributes(unittest.TestCase):
def test_getter_string(self):
"""
Getter can be a string representing the name of an attribute of _model
"""
inst = models.AttributeWithStringGetter()
self.assertEquals(inst.name, "my_name")
def test_getter_setter_string(self):
"""
Getter and setter can be a string representing the name of an attribute of _model
"""
inst = models.AttributeWithStringGetterAndSetter()
import sys
from pathlib import Path
import json
import dicttoxml
import flask
from flask import Flask, Response, render_template
import pymodm
try:
from fhirbug.config import settings
settings.configure("settings")
from fhirbug.server import GetRequestHandler, PostRequestHandler, PutRequestHandler
except ModuleNotFoundError:
# Allow execution from a git clone without having fhirball installed.
if Path('./fhirbug').is_dir(): # Executed from the example's directory`
sys.path.append("./")
elif Path('../../fhirbug').is_dir(): # Executed from the project's root directory`
sys.path.append("../../")
from fhirbug.config import settings
settings.configure("settings")
from fhirbug.server import GetRequestHandler, PostRequestHandler, PutRequestHandler
pymodm.connect(settings.PYMODM_CONFIG["URI"])
app = Flask(__name__)
app.config.update(debug=settings.DEBUG)
@app.route("/r4/", defaults={"path": ""})
@app.route("/r4/<path:path>", methods=["GET", "POST", "PUT"])