def test_field_default_value():
""" """
with open(str(FHIR_EXAMPLE_RESOURCES / "Organization.json"), "r") as fp:
json_dict = json.load(fp)
fhir_field = FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
default=json_dict,
fhir_release="R4",
)
assert json_dict == fhir_field.default.as_json()
fhir_field2 = FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
default=json.dumps(json_dict),
fhir_release="R4",
)
assert fhir_field2.default.as_json() == fhir_field.default.as_json()
fhir_field3 = FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
default=None,
fhir_release="R4",
)
assert fhir_field3.default is None
def test_field_from_unicode_with_empty_str():
""" """
fhir_field = FhirField(
title="Organization resource",
resource_class="fhir.resources.organization.Organization",
required=False,
fhir_release="R4",
)
value = fhir_field.from_unicode("")
assert value is None
def test_field_resource_type_constraint():
"""Regarding to issue: #3 """
fhir_field = FhirField(title="Organization resource",
resource_type="Organization",
fhir_release="R4")
with open(str(FHIR_EXAMPLE_RESOURCES / "Patient.json"), "r") as f:
json_dict = json.load(f)
try:
fhir_field.from_dict(json_dict)
except Invalid as e:
assert e.__class__.__name__ == "ConstraintNotSatisfied"
assert "Fhir Resource mismatched" in str(e)
async def test_fhir_field_deserializer(dummy_request):
""" """
with open(str(FHIR_EXAMPLE_RESOURCES / "Organization.json"), "r") as fp:
fhir_json = json.load(fp)
fhir_field = FhirField(
title="Organization resource",
resource_type="Organization",
required=False,
fhir_release="R4",
)
deserialized = query_adapter(fhir_field,
IJSONToValue,
args=[fhir_json, None])
assert IFhirFieldValue.providedBy(deserialized) is True
assert deserialized.as_json() == fhir_json
deserialized = query_adapter(fhir_field,
IJSONToValue,
args=[json.dumps(fhir_json), None])
assert IFhirFieldValue.providedBy(deserialized) is True
deserialized = query_adapter(fhir_field, IJSONToValue, args=[None, None])
assert deserialized is None
def test_field_with_wrong_default_value():
""" """
try:
FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
default=False,
fhir_release="R4",
)
except Invalid as exc:
assert "Only dict or string or None is accepted" in str(exc)
try:
FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
default={"id": "I am wrong FHIR"},
fhir_release="R4",
)
except Invalid as exc:
assert "Invalid FHIR resource json is provided!" in str(exc)
async def test_fhir_field_schema_serializer(dummy_request):
""" """
fhir_field = FhirField(title="Organization resource",
resource_type="Organization",
fhir_release="R4")
serializer = get_multi_adapter((fhir_field, IOrganization, dummy_request),
ISchemaFieldSerializeToJson)
schema_json = await serializer()
assert schema_json["type"] == "FhirField"
assert schema_json["resource_type"] == "Organization"
def test_field_from_unicode():
""" """
with open(str(FHIR_EXAMPLE_RESOURCES / "Organization.json"), "r") as fp:
json_str = fp.read()
fhir_field = FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
fhir_release="R4",
)
try:
fhir_field.from_unicode(json_str)
except Invalid as exc:
raise AssertionError("Code should not come here! as should return "
f"valid FhirResourceValue.\n{exc!s}")
# Test with invalid json string
try:
invalid_data = "{hekk: invalg, 2:3}"
fhir_field.from_unicode(invalid_data)
raise AssertionError(
"Code should not come here! invalid json string is provided")
except Invalid as exc:
assert "Invalid JSON String" in str(exc)
def test_field_pre_value_validate():
""" """
with open(str(FHIR_EXAMPLE_RESOURCES / "Organization.json"), "r") as fp:
json_str = fp.read()
fhir_field = FhirField(title="Organization resource", fhir_release="R4")
try:
fhir_field._pre_value_validate(json_str)
except Invalid as e:
raise AssertionError("Code should not come here!\n{0!s}".format(e))
fhir_dict = json.loads(json_str)
resource_type = fhir_dict.pop("resourceType")
try:
fhir_field._pre_value_validate(fhir_dict)
raise AssertionError(
"Code should not come here! As `resourceType` is not exists.")
except Invalid:
pass
fhir_dict.pop("id")
fhir_dict["resourceType"] = resource_type
try:
fhir_field._pre_value_validate(fhir_dict)
raise AssertionError(
"Code should not come here! As `id` is not exists.")
except Invalid:
pass
fhir_dict.pop("resourceType")
try:
fhir_field._pre_value_validate(fhir_dict)
raise AssertionError(
"Code should not come here! As both `id` and `resourceType` are not exists."
)
except Invalid:
pass
class IObservation(IFhirContent, IContentIndex):
index_field(
"observation_resource",
type="object",
field_mapping=fhir_resource_mapping("Observation"),
fhirpath_enabled=True,
resource_type="Observation",
fhir_release=FHIR_VERSION.R4,
)
observation_resource = FhirField(title="Observation Resource",
resource_type="Observation",
fhir_release="R4")
class IEncounter(IFhirContent, IContentIndex):
index_field(
"encounter_resource",
type="object",
field_mapping=fhir_resource_mapping("Encounter"),
fhirpath_enabled=True,
resource_type="Encounter",
fhir_release=FHIR_VERSION.R4,
)
encounter_resource = FhirField(title="Encounter Resource",
resource_type="Encounter",
fhir_release="R4")
def test_field_init_validation_with_noninterface():
""" """
# Wrong interface class
try:
FhirField(
title="Organization resource",
resource_interface="tests.fixtures.NoneInterfaceClass",
fhir_release="R4",
)
raise AssertionError(
"Code should not come here! as wrong interface class is provided")
except WrongType as exc:
assert "An interface is required" in str(exc)
def test_field_init_validation_with_wrong_dotted_path():
""" """
# Wrong module path
try:
FhirField(
title="Organization resource",
resource_interface="fake.tests.NoneInterfaceClass",
fhir_release="R4",
)
raise AssertionError(
"Code should not come here! as wrong interface class is provided")
except Invalid as exc:
assert "Invalid FHIR Resource Interface" in str(exc)
class ITask(IFhirContent, IContentIndex):
index_field(
"task_resource",
type="object",
field_mapping=fhir_resource_mapping("Task"),
fhirpath_enabled=True,
resource_type="Task",
fhir_release=FHIR_VERSION.R4,
)
task_resource = FhirField(title="Task Item Resource",
resource_type="Task",
fhir_release="R4")
class IChargeItem(IFhirContent, IContentIndex):
index_field(
"chargeitem_resource",
type="object",
field_mapping=fhir_resource_mapping("ChargeItem"),
fhirpath_enabled=True,
resource_type="ChargeItem",
fhir_release=FHIR_VERSION.R4,
)
chargeitem_resource = FhirField(title="Charge Item Resource",
resource_type="ChargeItem",
fhir_release="R4")
class IPatient(IFhirContent, IContentIndex):
index_field(
"patient_resource",
type="object",
field_mapping=fhir_resource_mapping("Patient"),
fhirpath_enabled=True,
resource_type="Patient",
fhir_release=FHIR_VERSION.R4,
)
index_field("p_type", type="keyword")
p_type = TextLine(title="Patient Type", required=False)
patient_resource = FhirField(title="Patient Resource",
resource_type="Patient",
fhir_release="R4")
class IOrganization(IFhirContent, IContentIndex):
index_field(
"organization_resource",
type="object",
field_mapping=fhir_resource_mapping("Organization"),
fhirpath_enabled=True,
resource_type="Organization",
fhir_release=FHIR_VERSION.R4,
)
index_field("org_type", type="keyword")
org_type = TextLine(title="Organization Type", required=False)
organization_resource = FhirField(title="Organization Resource",
resource_type="Organization",
fhir_release="R4")
class IMedicationRequest(IFhirContent, IContentIndex):
index_field(
"medicationrequest_resource",
type="object",
field_mapping=fhir_resource_mapping("MedicationRequest"),
fhirpath_enabled=True,
resource_type="MedicationRequest",
fhir_release=FHIR_VERSION.R4,
)
medicationrequest_resource = FhirField(
title="Medication Request Resource",
resource_type="MedicationRequest",
fhir_release="R4",
)
def test_field_validate():
""" """
with open(str(FHIR_EXAMPLE_RESOURCES / "Organization.json"), "r") as f:
json_dict = json.load(f)
organization = implementer(IFhirResource)(
lookup_fhir_class("Organization"))(json_dict)
fhir_resource_value = FhirFieldValue(obj=organization)
fhir_field = FhirField(title="Organization resource", fhir_release="R4")
try:
fhir_field._validate(fhir_resource_value)
except Invalid as exc:
raise AssertionError("Code should not come here!\n{0!s}".format(exc))
# Test wrong type value!
try:
fhir_field._validate(dict(hello="wrong"))
raise AssertionError(
"Code should not come here! wrong data type is provide")
except WrongType as exc:
assert "fhirpath_guillotina.field.FhirFieldValue" in str(exc)
type_, address_ = fhir_resource_value.type, fhir_resource_value.address
fhir_resource_value.type = 390
fhir_resource_value.address = "i am wrong type"
try:
fhir_field._validate(fhir_resource_value)
raise AssertionError(
"Code should not come here! wrong element data type is provided")
except Invalid as exc:
assert "invalid element inside fhir model object" in str(exc)
# Restore
fhir_resource_value.type = type_
fhir_resource_value.address = address_
# Test model constraint
fhir_field = FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyTaskResource",
fhir_release="R4",
)
try:
fhir_field._validate(fhir_resource_value)
raise AssertionError("Code should not come here! model mismatched!")
except WrongContainedType as exc:
assert "Wrong fhir resource value" in str(exc)
# Test resource type constraint!
fhir_field = FhirField(title="Organization resource",
resource_type="Task",
fhir_release="R4")
try:
fhir_field._validate(fhir_resource_value)
raise AssertionError("Code should not come here! model mismatched!")
except ConstraintNotSatisfied as exc:
assert "Resource type must be `Task`" in str(exc)
# Wrong interface attributes
fhir_field = FhirField(
title="Organization resource",
resource_interface="tests.fixtures.IWrongInterface",
fhir_release="R4",
)
try:
fhir_field._validate(fhir_resource_value)
raise AssertionError(
"Code should not come here! interface and object mismatched!")
except Invalid as exc:
assert "has failed to implement interface" in str(exc)
def test_field_from_dict():
""" """
with open(str(FHIR_EXAMPLE_RESOURCES / "Organization.json"), "r") as fp:
json_dict = json.load(fp)
fhir_field = FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
fhir_release="R4",
)
try:
fhir_resource_value = fhir_field.from_dict(json_dict)
except Invalid as exc:
raise AssertionError(
"Code should not come here! as "
f"should return valid FhirResourceValue.\n{exc!s}")
assert fhir_resource_value.resource_type == json_dict["resourceType"]
fhir_field = FhirField(title="Organization resource",
resource_type="Organization",
fhir_release="R4")
fhir_resource_value = fhir_field.from_dict(json_dict)
try:
fhir_resource_value.as_json()
except Exception:
raise AssertionError(
"Code should not come here! as should be valid fhir resource")
# Test auto discovery resource type
fhir_field = FhirField(title="Organization resource", fhir_release="R4")
fhir_resource_value = fhir_field.from_dict(json_dict)
assert fhir_resource_value.resource_type == json_dict["resourceType"]
# Test with invalid data type
try:
invalid_data = ("hello", "tree", "go")
fhir_field.from_dict(invalid_data)
except WrongType as exc:
assert "Only dict type data is allowed" in str(exc)
# Test with invalid fhir data
try:
invalid_data = dict(hello="fake", foo="bar")
fhir_field.from_dict(invalid_data)
raise AssertionError(
"Code should not come here, because of invalid data")
except Invalid as exc:
assert "Invalid FHIR resource" in str(exc)
# Test constraint
fhir_field = FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyTaskResource",
fhir_release="R4",
)
try:
fhir_field.from_dict(json_dict)
raise AssertionError(
"Code should not come here as required fhir model is "
"mismatched with provided resourcetype")
except ConstraintNotSatisfied as exc:
assert "Fhir Resource mismatched" in str(exc)
def test_field_init_validate(): # noqa: C901,E999
""" """
# Test with minimal params
try:
FhirField(title="Organization resource", fhir_release="R4")
except Invalid as exc:
raise AssertionError(
"Code should not come here, as everything should goes fine.\n{0!s}"
.format(exc))
# Test with fhir field specific params
try:
FhirField(
title="Organization resource",
resource_class="tests.fixtures.MyOrganizationResource",
resource_interface=(
"fhirpath_guillotina.interfaces.IFhirResource"),
fhir_release="R4",
)
except Invalid as exc:
raise AssertionError(
"Code should not come here, as everything should goes fine.\n{0!s}"
.format(exc))
try:
FhirField(
title="Organization resource",
resource_type="Organization",
fhir_release="R4",
)
except Invalid as exc:
raise AssertionError(
"Code should not come here, as everything should goes fine.\n{0!s}"
.format(exc))
# resource_type and model are not allowed combinely
try:
FhirField(
title="Organization resource",
resource_type="Organization",
resource_class="fhir.resources.organization.Organization",
fhir_release="R4",
)
raise AssertionError(
"Code should not come here! as should be invalid error")
except Invalid:
pass
# test with invalid python style dotted path (fake module)
try:
FhirField(
title="Organization resource",
resource_class="fake.fake.models.organization.Organization",
fhir_release="R4",
)
raise AssertionError(
"Code should not come here! as should be invalid error")
except Invalid:
pass
# test with invalid fhir model
try:
FhirField(
title="Organization resource",
resource_class="guillotina.content.Resource",
fhir_release="R4",
)
raise AssertionError(
"Code should not come here! as should be invalid error")
except Invalid as exc:
assert "has not been derrived from FHIRAbstractBase class" in str(exc)
# test with invalid ResourceType
try:
FhirField(
title="Organization resource",
resource_type="FakeResource",
fhir_release="R4",
)
raise AssertionError(
"Code should not come here! as should be invalid error")
except Invalid as exc:
assert "FakeResource is not valid fhir resource type" in str(exc)