def test_22_from_batch_command(self):
"""Test that `from_batch_command` produces a valid jobspec"""
jobid = job.submit(
self.fh, JobspecV1.from_batch_command("#!/bin/sh\nsleep 0", "nested sleep")
)
self.assertGreater(jobid, 0)
# test that a shebang is required
with self.assertRaises(ValueError):
job.submit(
self.fh,
JobspecV1.from_batch_command("sleep 0", "nested sleep with no shebang"),
)
def test_00_null_submit(self):
with self.assertRaises(EnvironmentError) as error:
job.submit(ffi.NULL, self.basic_jobspec)
self.assertEqual(error.exception.errno, errno.EINVAL)
with self.assertRaises(EnvironmentError) as error:
job.submit_get_id(ffi.NULL)
self.assertEqual(error.exception.errno, errno.EINVAL)
with self.assertRaises(EnvironmentError) as error:
job.submit(self.fh, ffi.NULL)
self.assertEqual(error.exception.errno, errno.EINVAL)
def test_00_null_submit(self):
with self.assertRaises(EnvironmentError) as error:
job.submit(ffi.NULL, self.jobspec)
self.assertEqual(error.exception.errno, errno.EINVAL)
with self.assertRaises(EnvironmentError) as error:
job.submit_get_id(ffi.NULL)
self.assertEqual(error.exception.errno, errno.EINVAL)
with self.assertRaises(EnvironmentError) as error:
job.submit(self.fh, ffi.NULL)
self.assertEqual(error.exception.errno, errno.EINVAL)
def test_15_job_cancel(self):
self.sleep_jobspec = JobspecV1.from_command(["sleep", "1000"])
jobid = job.submit(self.fh, self.sleep_jobspec, waitable=True)
job.cancel(self.fh, jobid)
fut = job.wait_async(self.fh, jobid=jobid).wait_for(5.0)
return_id, success, errmsg = fut.get_status()
self.assertEqual(return_id, jobid)
self.assertFalse(success)
def test_20_003_job_event_watch_sync(self):
jobid = job.submit(self.fh, JobspecV1.from_command(["sleep", "0"]))
self.assertTrue(jobid > 0)
future = job.event_watch_async(self.fh, jobid)
self.assertIsInstance(future, job.JobEventWatchFuture)
event = future.get_event()
self.assertIsInstance(event, job.EventLogEvent)
self.assertEqual(event.name, "submit")
future.cancel()
def test_13_job_kvs(self):
jobid = job.submit(self.fh, self.basic_jobspec, waitable=True)
job.wait(self.fh, jobid=jobid)
for job_kvs_dir in [
job.job_kvs(self.fh, jobid),
job.job_kvs_guest(self.fh, jobid),
]:
self.assertTrue(isinstance(job_kvs_dir, flux.kvs.KVSDir))
self.assertTrue(flux.kvs.exists(self.fh, job_kvs_dir.path))
self.assertTrue(flux.kvs.isdir(self.fh, job_kvs_dir.path))
def test_16_job_kill(self):
self.sleep_jobspec = JobspecV1.from_command(["sleep", "1000"])
jobid = job.submit(self.fh, self.sleep_jobspec, waitable=True)
# Wait for shell to fully start to avoid delay in signal
job.event_wait(self.fh, jobid, name="start")
job.event_wait(
self.fh, jobid, name="shell.start", eventlog="guest.exec.eventlog"
)
job.kill(self.fh, jobid, signum=signal.SIGKILL)
fut = job.wait_async(self.fh, jobid=jobid).wait_for(5.0)
return_id, success, errmsg = fut.get_status()
self.assertEqual(return_id, jobid)
self.assertFalse(success)
def test_20_004_job_event_watch(self):
jobid = job.submit(self.fh, JobspecV1.from_command(["sleep", "0"]))
self.assertTrue(jobid > 0)
events = []
for event in job.event_watch(self.fh, jobid):
self.assertIsInstance(event, job.EventLogEvent)
self.assertTrue(hasattr(event, "timestamp"))
self.assertTrue(hasattr(event, "name"))
self.assertTrue(hasattr(event, "context"))
self.assertIs(type(event.timestamp), float)
self.assertIs(type(event.name), str)
self.assertIs(type(event.context), dict)
events.append(event.name)
self.assertEqual(len(events), 10)
def test_20_006_job_event_wait(self):
jobid = job.submit(self.fh, JobspecV1.from_command(["sleep", "0"]))
self.assertTrue(jobid > 0)
event = job.event_wait(self.fh, jobid, "start")
self.assertIsInstance(event, job.EventLogEvent)
self.assertEqual(event.name, "start")
event = job.event_wait(
self.fh, jobid, "shell.init", eventlog="guest.exec.eventlog"
)
self.assertIsInstance(event, job.EventLogEvent)
self.assertEqual(event.name, "shell.init")
event = job.event_wait(self.fh, jobid, "clean")
self.assertIsInstance(event, job.EventLogEvent)
self.assertEqual(event.name, "clean")
with self.assertRaises(OSError):
job.event_wait(self.fh, jobid, "foo")
def test_20_007_job_event_wait_exception(self):
event = None
jobid = job.submit(
self.fh, JobspecV1.from_command(["sleep", "0"], num_tasks=128)
)
self.assertTrue(jobid > 0)
try:
event = job.event_wait(self.fh, jobid, "start")
except job.JobException as err:
self.assertEqual(err.severity, 0)
self.assertEqual(err.type, "alloc")
self.assertGreater(err.timestamp, 0.0)
self.assertIs(event, None)
try:
event = job.event_wait(self.fh, jobid, "start", raiseJobException=False)
except OSError as err:
self.assertEqual(err.errno, errno.ENODATA)
self.assertIs(event, None)
def test_20_005_job_event_watch_with_cancel(self):
jobid = job.submit(self.fh,
JobspecV1.from_command(["sleep", "3"]),
waitable=True)
self.assertTrue(jobid > 0)
events = []
future = job.event_watch_async(self.fh, jobid)
while True:
event = future.get_event()
if event is None:
break
if event.name == "start":
future.cancel()
events.append(event.name)
self.assertEqual(event, None)
# Should have less than the expected number of events due to cancel
self.assertLess(len(events), 8)
job.cancel(self.fh, jobid)
job.wait(self.fh, jobid)
def test_20_005_1_job_event_watch_with_cancel_stop_true(self):
jobid = job.submit(self.fh,
JobspecV1.from_command(["sleep", "3"]),
waitable=True)
self.assertTrue(jobid > 0)
events = []
future = job.event_watch_async(self.fh, jobid)
def cb(future, events):
event = future.get_event()
if event.name == "start":
future.cancel(stop=True)
events.append(event.name)
future.then(cb, events)
rc = self.fh.reactor_run()
# Last event should be "start"
self.assertEqual(events[-1], "start")
job.cancel(self.fh, jobid)
job.wait(self.fh, jobid)
def test_20_001_job_event_watch_async(self):
myarg = dict(a=1, b=2)
events = []
def cb(future, arg):
self.assertEqual(arg, myarg)
event = future.get_event()
if event is None:
future.get_flux().reactor_stop()
return
self.assertIsInstance(event, job.EventLogEvent)
events.append(event.name)
jobid = job.submit(self.fh, JobspecV1.from_command(["sleep", "0"]))
self.assertTrue(jobid > 0)
future = job.event_watch_async(self.fh, jobid)
self.assertIsInstance(future, job.JobEventWatchFuture)
future.then(cb, myarg)
rc = self.fh.reactor_run()
self.assertGreaterEqual(rc, 0)
self.assertEqual(len(events), 10)
self.assertEqual(events[0], "submit")
self.assertEqual(events[-1], "clean")
def test_20_002_job_event_watch_no_autoreset(self):
jobid = job.submit(self.fh, JobspecV1.from_command(["sleep", "0"]))
self.assertTrue(jobid > 0)
future = job.event_watch_async(self.fh, jobid)
self.assertIsInstance(future, job.JobEventWatchFuture)
# First event should be "submit"
event = future.get_event(autoreset=False)
self.assertIsInstance(event, job.EventLogEvent)
self.assertEqual(event.name, "submit")
# get_event() again with no reset returns same event:
event = future.get_event(autoreset=False)
self.assertIsInstance(event, job.EventLogEvent)
self.assertEqual(event.name, "submit")
# reset, then get_event() should get next event
future.reset()
event = future.get_event(autoreset=False)
self.assertIsInstance(event, job.EventLogEvent)
self.assertEqual(event.name, "validate")
future.cancel()
def work(self, units):
# overload the base class work method
from flux import job as flux_job
self.advance(units, rps.AGENT_SCHEDULING, publish=True, push=False)
for unit in units:
# # FIXME: transfer from executor
# self._cu_environment = self._populate_cu_environment()
jd = json.dumps(
ru.read_json('/home/merzky/projects/flux/spec.json'))
jid = flux_job.submit(self._flux, jd)
unit['flux_id'] = jid
# publish without state changes - those are retroactively applied
# based on flux event timestamps.
# TODO: apply some bulking, submission is not really fast.
# But at the end performance is determined by flux now, so
# communication only affects timelyness of state updates.
self._q.put(unit)
def test_02_sync_submit(self):
jobid = job.submit(self.fh, self.basic_jobspec)
self.assertGreater(jobid, 0)
def test_01_nonstring_submit(self):
with self.assertRaises(TypeError):
job.submit(self.fh, 0)
def test_02_sync_submit(self):
jobid = job.submit(self.fh, self.jobspec)
self.assertGreater(jobid, 0)
def test_32_job_result(self):
result = {}
ids = []
def cb(future, jobid):
result[jobid] = future
ids.append(job.submit(self.fh, JobspecV1.from_command(["true"])))
ids.append(job.submit(self.fh, JobspecV1.from_command(["false"])))
ids.append(job.submit(self.fh, JobspecV1.from_command(["nosuchprog"])))
ids.append(
job.submit(self.fh, JobspecV1.from_command(["sleep", "120"])))
# Submit held job so we can cancel before RUN state
ids.append(
job.submit(self.fh, JobspecV1.from_command(["true"]), urgency=0))
job.cancel(self.fh, ids[4])
for jobid in ids:
flux.job.result_async(self.fh, jobid).then(cb, jobid)
def cancel_on_start(future, jobid):
event = future.get_event()
if event is None:
return
if event.name == "shell.start":
job.cancel(self.fh, jobid)
future.cancel()
job.event_watch_async(self.fh, ids[3],
eventlog="guest.exec.eventlog").then(
cancel_on_start, ids[3])
self.fh.reactor_run()
self.assertEqual(len(result.keys()), len(ids))
self.addTypeEqualityFunc(JobInfo, self.assertJobInfoEqual)
self.assertEqual(
result[ids[0]].get_info(),
JobInfo({
"id": ids[0],
"result": flux.constants.FLUX_JOB_RESULT_COMPLETED,
"t_start": 1.0,
"t_run": 2.0,
"t_cleanup": 3.0,
"waitstatus": 0,
"exception_occurred": False,
}),
)
self.assertEqual(
result[ids[1]].get_info(),
JobInfo({
"id": ids[1],
"result": flux.constants.FLUX_JOB_RESULT_FAILED,
"t_submit": 1.0,
"t_run": 2.0,
"t_cleanup": 3.0,
"waitstatus": 256,
"exception_occurred": False,
}),
)
self.assertEqual(
result[ids[2]].get_info(),
JobInfo({
"id": ids[2],
"result": flux.constants.FLUX_JOB_RESULT_FAILED,
"t_submit": 1.0,
"t_run": 2.0,
"t_cleanup": 3.0,
"waitstatus": 32512,
"exception_occurred": True,
"exception_type": "exec",
"exception_note": "task 0.*: start failed: nosuchprog: "
"No such file or directory",
"exception_severity": 0,
}),
)
self.assertEqual(
result[ids[3]].get_info(),
JobInfo({
"id": ids[3],
"result": flux.constants.FLUX_JOB_RESULT_CANCELED,
"t_submit": 1.0,
"t_run": 2.0,
"t_cleanup": 3.0,
"waitstatus": 36608, # 143<<8
"exception_occurred": True,
"exception_type": "cancel",
"exception_note": "",
"exception_severity": 0,
}),
)
self.assertEqual(
result[ids[4]].get_info(),
JobInfo({
"id": ids[4],
"result": flux.constants.FLUX_JOB_RESULT_CANCELED,
"t_submit": 0.0,
"exception_occurred": True,
"exception_type": "cancel",
"exception_note": "",
"exception_severity": 0,
}),
)
# synchronous job.result() test
self.assertEqual(job.result(self.fh, ids[3]),
result[ids[3]].get_info())
def test_23_from_nest_command(self):
"""Test that `from_batch_command` produces a valid jobspec"""
jobid = job.submit(self.fh, JobspecV1.from_nest_command(["sleep",
"0"]))
self.assertGreater(jobid, 0)
def submit(self, args):
"""
Submit job, constructing jobspec from args.
Returns jobid.
"""
if not args.command:
raise ValueError("job command and arguments are missing")
jobspec = JobspecV1.from_command(
args.command,
num_tasks=args.ntasks,
cores_per_task=args.cores_per_task,
gpus_per_task=args.gpus_per_task,
num_nodes=args.nodes,
)
jobspec.cwd = os.getcwd()
jobspec.environment = dict(os.environ)
if args.time_limit is not None:
jobspec.duration = args.time_limit
if args.job_name is not None:
jobspec.setattr("system.job.name", args.job_name)
if args.input is not None:
jobspec.setattr_shell_option("input.stdin.type", "file")
jobspec.setattr_shell_option("input.stdin.path", args.input)
if args.output is not None:
jobspec.setattr_shell_option("output.stdout.type", "file")
jobspec.setattr_shell_option("output.stdout.path", args.output)
if args.label_io:
jobspec.setattr_shell_option("output.stdout.label", True)
if args.error is not None:
jobspec.setattr_shell_option("output.stderr.type", "file")
jobspec.setattr_shell_option("output.stderr.path", args.error)
if args.label_io:
jobspec.setattr_shell_option("output.stderr.label", True)
if args.setopt is not None:
for kv in args.setopt:
# Split into key, val with a default for 1 if no val given:
key, val = (kv.split("=", 1) + [1])[:2]
try:
val = json.loads(val)
except:
pass
jobspec.setattr_shell_option(key, val)
if args.setattr is not None:
for kv in args.setattr:
tmp = kv.split("=", 1)
if len(tmp) != 2:
raise ValueError("--setattr: Missing value for attr " + kv)
key = tmp[0]
try:
val = json.loads(tmp[1])
except:
val = tmp[1]
jobspec.setattr(key, val)
arg_debug = False
arg_waitable = False
if args.flags is not None:
for tmp in args.flags:
for flag in tmp.split(","):
if flag == "debug":
arg_debug = True
elif flag == "waitable":
arg_waitable = True
else:
raise ValueError("--flags: Unknown flag " + flag)
if args.dry_run:
print(jobspec.dumps(), file=sys.stdout)
sys.exit(0)
h = flux.Flux()
return job.submit(
h,
jobspec.dumps(),
priority=args.priority,
waitable=arg_waitable,
debug=arg_debug,
)
if len(sys.argv) != 2:
njobs = 10
else:
njobs = int(sys.argv[1])
# Open connection to broker and subscribe to state notifications
h = flux.Flux()
h.event_subscribe("job-state")
# Submit several test jobs, building dictionary by jobid,
# where each entry contains a list of job states
# N.B. no notification is provided for the NEW state
jobspec = JobspecV1.from_command(["hostname"])
jobs = {}
for i in range(njobs):
jobid = job.submit(h, jobspec)
jobs[jobid] = ["NEW"]
# Process events until all jobs have reached INACTIVE state.
while not all_inactive(jobs):
event = h.event_recv()
parse_notification(jobs, event)
# Verify that each job advanced through the expected set of states, in order
for jobid in jobs:
if cmp(jobs[jobid], expected_states) != 0:
print("{}: {}: {}".format("bad state list", jobid, jobs[jobid]))
sys.exit(1)
# Unsubscribe to state notifications and close connection to broker.
h.event_unsubscribe("job-state")
def submit(self, args):
"""
Submit job, constructing jobspec from args.
Returns jobid.
"""
jobspec = self.init_jobspec(args)
jobspec.cwd = os.getcwd()
jobspec.environment = get_filtered_environment(args.env)
if args.time_limit is not None:
jobspec.duration = args.time_limit
if args.job_name is not None:
jobspec.setattr("system.job.name", args.job_name)
if args.input is not None:
jobspec.stdin = args.input
if args.output is not None and args.output not in ["none", "kvs"]:
jobspec.stdout = args.output
if args.label_io:
jobspec.setattr_shell_option("output.stdout.label", True)
if args.error is not None:
jobspec.stderr = args.error
if args.label_io:
jobspec.setattr_shell_option("output.stderr.label", True)
if args.setopt is not None:
for keyval in args.setopt:
# Split into key, val with a default for 1 if no val given:
key, val = (keyval.split("=", 1) + [1])[:2]
try:
val = json.loads(val)
except (json.JSONDecodeError, TypeError):
pass
jobspec.setattr_shell_option(key, val)
if args.debug_emulate:
debugged.set_mpir_being_debugged(1)
if debugged.get_mpir_being_debugged() == 1:
# if stop-tasks-in-exec is present, overwrite
jobspec.setattr_shell_option("stop-tasks-in-exec", json.loads("1"))
if args.setattr is not None:
for keyval in args.setattr:
tmp = keyval.split("=", 1)
if len(tmp) != 2:
raise ValueError("--setattr: Missing value for attr " + keyval)
key = tmp[0]
try:
val = json.loads(tmp[1])
except (json.JSONDecodeError, TypeError):
val = tmp[1]
jobspec.setattr(key, val)
arg_debug = False
arg_waitable = False
if args.flags is not None:
for tmp in args.flags:
for flag in tmp.split(","):
if flag == "debug":
arg_debug = True
elif flag == "waitable":
arg_waitable = True
else:
raise ValueError("--flags: Unknown flag " + flag)
if args.dry_run:
print(jobspec.dumps(), file=sys.stdout)
sys.exit(0)
flux_handle = flux.Flux()
jobid = job.submit(
flux_handle,
jobspec.dumps(),
priority=args.priority,
waitable=arg_waitable,
debug=arg_debug,
)
return JobID(jobid)
num_nodes=2,
cores_per_task=2)
compute_jobspec.cwd = os.getcwd()
compute_jobspec.environment = dict(os.environ)
# create bad jobspec that will fail
bad_jobspec = JobspecV1.from_command(["/bin/false"])
jobs = []
flags = flux.constants.FLUX_JOB_WAITABLE
# submit jobs
for i in range(njobs):
if i < njobs / 2:
jobid = flux.job.submit(h, compute_jobspec, flags=flags)
print("submit: {} compute.py".format(jobid))
else:
jobid = job.submit(h, bad_jobspec, flags=flags)
print("submit: {} bad_jobspec".format(jobid))
jobs.append(jobid)
# wait for each job in turn by jobid
for jobid in jobs:
result = job.wait(h, jobid)
if result.success:
print("wait: {} Success".format(result.jobid))
else:
print("wait: {} Error: {}".format(result.jobid, result.errstr))
# vim: tabstop=4 shiftwidth=4 expandtab
def test_08_jobspec_submit(self):
jobspec = Jobspec.from_yaml_stream(self.basic_jobspec)
jobid = job.submit(self.fh, jobspec)
self.assertGreater(jobid, 0)
def submit(self, args):
"""
Submit job, constructing jobspec from args.
Returns jobid.
"""
if not args.command:
raise ValueError("job command and arguments are missing")
jobspec = JobSpec(
args.command,
num_tasks=args.ntasks,
cores_per_task=args.cores_per_task,
gpus_per_task=args.gpus_per_task,
num_nodes=args.nodes,
)
jobspec.set_cwd(os.getcwd())
jobspec.set_environment(dict(os.environ))
if args.time_limit is not None:
jobspec.set_duration(args.time_limit)
if args.input is not None:
jobspec.setattr_shopt("input.stdin.type", "file")
jobspec.setattr_shopt("input.stdin.path", args.input)
if args.output is not None:
jobspec.setattr_shopt("output.stdout.type", "file")
jobspec.setattr_shopt("output.stdout.path", args.output)
if args.label_io:
jobspec.setattr_shopt("output.stdout.label", True)
if args.error is not None:
jobspec.setattr_shopt("output.stderr.type", "file")
jobspec.setattr_shopt("output.stderr.path", args.error)
if args.label_io:
jobspec.setattr_shopt("output.stderr.label", True)
if args.setopt is not None:
for kv in args.setopt:
# Split into key, val with a default for 1 if no val given:
key, val = (kv.split("=", 1) + [1])[:2]
try:
val = json.loads(val)
except:
pass
jobspec.setattr_shopt(key, val)
if args.setattr is not None:
for kv in args.setattr:
tmp = kv.split("=", 1)
if len(tmp) != 2:
raise ValueError("--setattr: Missing value for attr " + kv)
key = tmp[0]
try:
val = json.loads(tmp[1])
except:
val = tmp[1]
jobspec.setattr(key, val)
if args.dry_run:
print(jobspec.dumps(), file=sys.stdout)
sys.exit(0)
h = flux.Flux()
flags = 0
if args.debug:
flags = flux.constants.FLUX_JOB_DEBUG
return job.submit(h,
jobspec.dumps(),
priority=args.priority,
flags=flags)
def test_01_nonstring_submit(self):
with self.assertRaises(TypeError):
job.submit(self.fh, 0)
if len(sys.argv) != 2:
njobs = 10
else:
njobs = int(sys.argv[1])
# Open connection to broker
h = flux.Flux()
# Submit njobs test jobs (half will fail)
jobspec = JobspecV1.from_command(["/bin/true"])
jobspec_fail = JobspecV1.from_command(["/bin/false"])
jobs = []
for i in range(njobs):
if i < njobs / 2:
jobid = job.submit(h, jobspec, waitable=True)
print("submit: {} /bin/true".format(jobid))
else:
jobid = job.submit(h, jobspec_fail, waitable=True)
print("submit: {} /bin/false".format(jobid))
jobs.append(jobid)
# Wait for each job in turn
for jobid in jobs:
result = job.wait(h, jobid)
if result.success:
print("wait: {} Success".format(result.jobid))
else:
print("wait: {} Error: {}".format(result.jobid, result.errstr))
# vim: tabstop=4 shiftwidth=4 expandtab
if len(sys.argv) != 2:
njobs = 10
else:
njobs = int(sys.argv[1])
# Open connection to broker and subscribe to state notifications
h = flux.Flux()
h.event_subscribe("job-state")
# Submit several test jobs, building dictionary by jobid,
# where each entry contains a list of job states
# N.B. no notification is provided for the NEW state
jobspec = make_jobspec()
jobs = {}
for i in range(njobs):
jobid = job.submit(h, jobspec)
jobs[jobid] = ["NEW"]
# Process events until all jobs have reached INACTIVE state.
while not all_inactive(jobs):
event = h.event_recv()
parse_notification(jobs, event)
# Verify that each job advanced through the expected set of states, in order
for jobid in jobs:
if cmp(jobs[jobid], expected_states) != 0:
print("{}: {}: {}".format("bad state list", jobid, jobs[jobid]))
sys.exit(1)
# Unsubscribe to state notifications and close connection to broker.
h.event_unsubscribe("job-state")
