#create the interaction system for tracks
tl = TrackLabeler('Bundle Picker',
qb,
qb.downsampled_tracks(),
vol_shape=(182, 218, 182),
tracks_alpha=1)
#add a interactive slicing/masking tool
#sl = Slicer(affine,data)
#add one way communication between tl and sl
#tl.slicer=sl
title = 'Bundle Picking'
w = Window(caption=title, width=1200, height=800, bgcolor=(0., 0., 0.2))
region = Region(regionname='Main',
extent_min=np.array([-5.0, -5, -5]),
extent_max=np.array([5, 5, 5]))
ax = Axes(name="3 axes", scale=10, linewidth=2.0)
vert = np.array([[2.0, 3.0, 0.0]], dtype=np.float32)
ptr = np.array([[.2, .2, .2]], dtype=np.float32)
tex = Text3D("Text3D", vert, "(0,0,0)", 10 * 2.5, 10 * .5, ptr)
#region.add_actor(ax)
#region.add_actor(tex)
region.add_actor(tl)
#region.add_actor(streamlines)
#w.screenshot( 'red.png' )
w.add_region(region)
w.refocus_camera()
tracks = [tr[0] for tr in a[0]]
#tracks = tracks-np.concatenate(tracks,axis=0)
lentra = [len(t) for t in tracks]
colors = np.random.rand(np.sum(lentra),4)
#colors[:,3]=0.9
"""
streamlines = Line('fornix', tracks, colors, line_width=2)
from fos import Window, Region
from fos.actor.axes import Axes
from fos.actor.text import Text3D
title = 'Bundle Picker'
w = Window(caption=title, width=1200, height=800, bgcolor=(0., 0., 0.2))
region = Region(regionname='Main',
extent_min=np.array([-5.0, -5, -5]),
extent_max=np.array([5, 5, 5]))
ax = Axes(name="3 axes", linewidth=2.0)
vert = np.array([[2.0, 3.0, 0.0]], dtype=np.float32)
ptr = np.array([[.2, .2, .2]], dtype=np.float32)
tex = Text3D("Text3D", vert, "Reg", 10, 2, ptr)
region.add_actor(ax)
region.add_actor(tex)
region.add_actor(streamlines)
#w.screenshot( 'red.png' )
w.add_region(region)
w.refocus_camera()
affine = None
data = np.zeros((256, 128, 32), np.uint8)
volume = np.zeros(data.shape + (3, ))
volume[..., 0] = data.copy()
volume[..., 1] = data.copy()
volume[..., 2] = data.copy()
volume = volume.astype(np.ubyte)
volume[..., :] = (255, 0, 0)
#volume[] =
print volume.shape, volume.min(), volume.max()
window = Window()
region = Region()
#volume = data
tex = Texture3D('Buzz', volume, affine)
w, h, d = volume.shape[:-1]
depindex = 100
dep = (0.5 + depindex) / np.float(d)
texcoords = np.array([[dep, 0, 0], [dep, 0, 1], [dep, 1, 1], [dep, 1, 0]])
vertcoords = np.array([[-w / 2., -h / 2., 0.], [-w / 2., h / 2., 0.],
[w / 2., h / 2., 0.], [w / 2, -h / 2., 0]])
tex.update_quad(texcoords, vertcoords)
ax = Axes(name="3 axes", linewidth=2.0)
vert = np.array([[2.0, 3.0, 0.0]], dtype=np.float32)
ptr = np.array([[.2, .2, .2]], dtype=np.float32)
affine = None
data = np.zeros((256, 128, 32), np.uint8)
volume = np.zeros(data.shape+(3,))
volume[...,0] = data.copy()
volume[...,1] = data.copy()
volume[...,2] = data.copy()
volume = volume.astype(np.ubyte)
volume[..., :] = (255, 0 , 0)
#volume[] =
print volume.shape, volume.min(), volume.max()
window = Window()
region = Region()
#volume = data
tex = Texture3D('Buzz', volume, affine)
w, h, d = volume.shape[:-1]
depindex = 100
dep = (0.5 + depindex) / np.float(d)
texcoords = np.array([ [dep, 0, 0],
[dep, 0, 1],
[dep, 1, 1],
[dep, 1, 0] ])
vertcoords = np.array( [ [-w/2., -h/2., 0.],
[-w/2., h/2., 0.],
[w/2., h/2., 0.],
[w/2, -h/2., 0] ])
tl = TrackLabeler('Bundle Picker',
qb,qb.downsampled_tracks(),
vol_shape=(182, 218, 182),tracks_alpha=1)
#add a interactive slicing/masking tool
#sl = Slicer(affine,data)
#add one way communication between tl and sl
#tl.slicer=sl
title = 'Bundle Picking'
w = Window(caption = title,
width = 1200,
height = 800,
bgcolor = (0.,0.,0.2) )
region = Region( regionname = 'Main',
extent_min = np.array([-5.0, -5, -5]),
extent_max = np.array([5, 5 ,5]))
ax = Axes(name = "3 axes", scale= 10, linewidth=2.0)
vert = np.array( [[2.0,3.0,0.0]], dtype = np.float32 )
ptr = np.array( [[.2,.2,.2]], dtype = np.float32 )
tex = Text3D( "Text3D", vert, "(0,0,0)", 10*2.5, 10*.5, ptr)
#region.add_actor(ax)
#region.add_actor(tex)
region.add_actor(tl)
#region.add_actor(streamlines)
#w.screenshot( 'red.png' )
w.add_region(region)
w.refocus_camera()
# load initial QuickBundles with threshold 30mm
fpkl = dname + "data/subj_05/101_32/DTI/qb_gqi_1M_linear_30.pkl"
# qb=QuickBundles(T,30.,12)
# save_pickle(fpkl,qb)
qb = load_pickle(fpkl)
# create the interaction system for tracks
tl = TrackLabeler("Bundle Picker", qb, qb.downsampled_tracks(), vol_shape=data.shape, tracks_alpha=1)
# add a interactive slicing/masking tool
# sl = Slicer(affine,data)
# add one way communication between tl and sl
# tl.slicer=sl
title = "Bundle Picking"
w = Window(caption=title, width=1200, height=800, bgcolor=(0.0, 0.0, 0.2))
region = Region(regionname="Main", extent_min=np.array([-5.0, -5, -5]), extent_max=np.array([5, 5, 5]))
ax = Axes(name="3 axes", scale=10, linewidth=2.0)
vert = np.array([[2.0, 3.0, 0.0]], dtype=np.float32)
ptr = np.array([[0.2, 0.2, 0.2]], dtype=np.float32)
tex = Text3D("Text3D", vert, "(0,0,0)", 10 * 2.5, 10 * 0.5, ptr)
region.add_actor(ax)
region.add_actor(tex)
region.add_actor(tl)
# region.add_actor(streamlines)
# w.screenshot( 'red.png' )
w.add_region(region)
w.refocus_camera()
colors = np.random.rand(np.sum(lentra),4)
#colors[:,3]=0.9
"""
streamlines = Line('fornix',tracks,colors,line_width=2)
from fos import Window, Region
from fos.actor.axes import Axes
from fos.actor.text import Text3D
title='Bundle Picker'
w = Window(caption = title,
width = 1200,
height = 800,
bgcolor = (0.,0.,0.2) )
region = Region( regionname = 'Main',
extent_min = np.array([-5.0, -5, -5]),
extent_max = np.array([5, 5 ,5]))
ax = Axes(name = "3 axes", linewidth=2.0)
vert = np.array( [[2.0,3.0,0.0]], dtype = np.float32 )
ptr = np.array( [[.2,.2,.2]], dtype = np.float32 )
tex = Text3D( "Text3D", vert, "Reg", 10, 2, ptr)
region.add_actor(ax)
region.add_actor(tex)
region.add_actor(streamlines)
#w.screenshot( 'red.png' )
w.add_region(region)
w.refocus_camera()