Esempi in Python per set_proj_env

Esempio n. 1

File: 3_results_sample_characteristics.py Progetto: lindenmp/normative_neurodev_cs_t1

plt.rcParams['svg.fonttype'] = 'none'

# In[2]:

sys.path.append(
    '/Users/lindenmp/Google-Drive-Penn/work/research_projects/normative_neurodev_cs_t1/1_code/'
)
from func import set_proj_env, my_get_cmap, get_fdr_p

# In[3]:

train_test_str = 'train_test'
exclude_str = 't1Exclude'  # 't1Exclude' 'fsFinalExclude'
parc_str = 'schaefer'  # 'schaefer' 'lausanne'
parc_scale = 400  # 200 400 | 60 125 250
parcel_names, parcel_loc, drop_parcels, num_parcels, yeo_idx, yeo_labels = set_proj_env(
    exclude_str=exclude_str, parc_str=parc_str, parc_scale=parc_scale)

# In[4]:

# output file prefix
outfile_prefix = exclude_str + '_' + parc_str + '_' + str(parc_scale) + '_'
outfile_prefix

# ### Setup directory variables

# In[5]:

figdir = os.path.join(os.environ['OUTPUTDIR'], 'figs')
print(figdir)
if not os.path.exists(figdir): os.makedirs(figdir)

Esempio n. 2

File: 0_get_sample.py Progetto: lindenmp/normative_neurodev_cs_t1

# In[2]:

sys.path.append(
    '/Users/lindenmp/Google-Drive-Penn/work/research_projects/normative_neurodev_cs_t1/1_code/'
)
from func import set_proj_env, my_get_cmap, rank_int

# In[3]:

train_test_str = 'squeakycleanExclude'
exclude_str = 't1Exclude'  # 't1Exclude' 'fsFinalExclude'
parc_str = 'schaefer'  # 'schaefer' 'lausanne'
parc_scale = 400  # 200 400 | 60 125 250
_ = set_proj_env(exclude_str=exclude_str,
                 parc_str=parc_str,
                 parc_scale=parc_scale)

# In[4]:

# output file prefix
outfile_prefix = exclude_str + '_'
outfile_prefix

# ### Setup directory variables

# In[5]:

print(os.environ['PIPELINEDIR'])
if not os.path.exists(os.environ['PIPELINEDIR']):
    os.makedirs(os.environ['PIPELINEDIR'])