def search_continuous(self,
continuous_set_id=None,
reference_name="",
start=0,
end=0):
"""
Returns the result of running a search_continuous method
on a request with the passed-in parameters.
:param str continuous_set_id: ID of the ContinuousSet being searched
:param str reference_name: name of the reference to search
(ex: "chr1")
:param int start: search start position on reference
:param int end: end position on reference
:return: an iterator over Continuous returned in the
SearchContinuousResponse object.
"""
request = protocol.SearchContinuousRequest()
request.continuous_set_id = continuous_set_id
request.reference_name = reference_name
request.start = start
request.end = end
request.page_size = pb.int(self._page_size)
return self._run_search_request(request, "continuous",
protocol.SearchContinuousResponse)
def testSearchContinuous(self):
continuousSets = self.getAllContinuousSets()
for continuousSet in continuousSets:
path = "continuous/search"
request = protocol.SearchContinuousRequest()
request.continuous_set_id = continuousSet.id
request.start = 49200000
request.end = 49308000
request.reference_name = "chr19"
responseData = self.sendSearchRequest(
path, request, protocol.SearchContinuousResponse)
for continuous in responseData.continuous:
self.assertGreater(len(continuous.values), 0)
def testSearchContinuous(self):
request = protocol.SearchContinuousRequest()
request.continuous_set_id = self.continuousSetId
request.page_size = self.pageSize
request.reference_name = self.referenceName
request.start = self.start
request.end = self.end
self.httpClient.search_continuous(self.continuousSetId,
reference_name=self.referenceName,
start=self.start,
end=self.end)
self.httpClient._run_search_request.assert_called_once_with(
request, "continuous", protocol.SearchContinuousResponse)