def testTopLevelIdsUnique(self):
datasetId = "a"
idStr = "b"
dataset = datasets.Dataset(datasetId)
readGroupSet = reads.AbstractReadGroupSet(dataset, idStr)
variantSet = variants.AbstractVariantSet(dataset, idStr)
self.assertNotEqual(readGroupSet.getId(), variantSet.getId())
def setUp(self):
self._variantSetName = "testVariantSet"
self._dataset = datasets.Dataset("datasetId")
self._variantSet = variants.AbstractVariantSet(self._dataset,
self._variantSetName)
def getVariantSet(self):
return variants.AbstractVariantSet(self.getDataset(), "variantSet")
def testNonexistentVariantSet(self):
# a request for a variant set that doesn't exist should throw an error
variantSet = variants.AbstractVariantSet(self.dataset, 'notFound')
self.request.variant_set_id = variantSet.getId()
with self.assertRaises(exceptions.VariantSetNotFoundException):
self.backend.variantsGenerator(self.request)