def stop_job(self, job_wrapper):
"""Attempts to delete a job from the DRM queue"""
job = job_wrapper.get_job()
external_id = job.job_runner_external_id
galaxy_id_tag = job_wrapper.get_id_tag()
if job.container:
try:
log.info(
f"stop_job(): {job.id}: trying to stop container .... ({external_id})"
)
# self.watched = [cjs for cjs in self.watched if cjs.job_id != external_id]
new_watch_list = list()
cjs = None
for tcjs in self.watched:
if tcjs.job_id != external_id:
new_watch_list.append(tcjs)
else:
cjs = tcjs
break
self.watched = new_watch_list
self._stop_container(job_wrapper)
# self.watched.append(cjs)
if cjs.job_wrapper.get_state() != model.Job.states.DELETED:
external_metadata = not asbool(
cjs.job_wrapper.job_destination.params.get(
"embed_metadata_in_job", True))
if external_metadata:
self._handle_metadata_externally(
cjs.job_wrapper, resolve_requirements=True)
log.debug(
f"({galaxy_id_tag}/{external_id}) job has completed")
self.work_queue.put((self.finish_job, cjs))
except Exception as e:
log.warning(
f"stop_job(): {job.id}: trying to stop container failed. ({e})"
)
try:
self._kill_container(job_wrapper)
except Exception as e:
log.warning(
f"stop_job(): {job.id}: trying to kill container failed. ({e})"
)
failure_message = condor_stop(external_id)
if failure_message:
log.debug(
f"({external_id}). Failed to stop condor {failure_message}"
)
else:
failure_message = condor_stop(external_id)
if failure_message:
log.debug(
f"({external_id}). Failed to stop condor {failure_message}"
)
def stop_job(self, job):
"""Attempts to delete a job from the DRM queue"""
external_id = job.job_runner_external_id
failure_message = condor_stop(external_id)
if failure_message:
log.debug("(%s/%s). Failed to stop condor %s" %
(external_id, failure_message))
def stop_job(self, job_wrapper):
"""Attempts to delete a job from the DRM queue"""
job = job_wrapper.get_job()
external_id = job.job_runner_external_id
failure_message = condor_stop(external_id)
if failure_message:
log.debug("(%s). Failed to stop condor %s" % (external_id, failure_message))
