def resolved_markdown(workflow_markdown):
# Convert workflow markdown to internal Galaxy markdown with object id references
# and with sections expanded.
trans = MockTrans()
validate_galaxy_markdown(workflow_markdown)
galaxy_markdown = resolve_invocation_markdown(trans, example_invocation(trans), workflow_markdown)
return galaxy_markdown
def _generate_internal_markdown(self,
trans,
invocation,
runtime_report_config_json=None):
workflow_markdown = self._generate_report_markdown(
trans,
invocation,
runtime_report_config_json=runtime_report_config_json)
internal_markdown = resolve_invocation_markdown(
trans, invocation, workflow_markdown)
return internal_markdown
def generate_report_json(self,
trans,
invocation,
runtime_report_config_json=None):
"""
"""
workflow_markdown = self._generate_report_markdown(
trans,
invocation,
runtime_report_config_json=runtime_report_config_json)
internal_markdown = resolve_invocation_markdown(
trans, invocation, workflow_markdown)
export_markdown, extra_rendering_data = ready_galaxy_markdown_for_export(
trans, internal_markdown)
rval = {
"render_format":
"markdown", # Presumably the frontend could render things other ways.
"markdown": export_markdown,
}
rval.update(extra_rendering_data)
return rval