sort_comp = self.sort_comp
assert sort_key in ["filename", "dbkey", "name", "designation"]
assert sort_comp in ["lexical", "numeric"]
key = operator.attrgetter(sort_key)
if sort_comp == "numeric":
key = _compose(int, key)
return sorted(matches, key=key, reverse=reverse)
def _compose(f, g):
return lambda x: f(g(x))
DEFAULT_DATASET_COLLECTOR = DatasetCollector(DEFAULT_DATASET_COLLECTOR_DESCRIPTION)
DEFAULT_TOOL_PROVIDED_DATASET_COLLECTOR = ToolMetadataDatasetCollector(ToolProvidedMetadataDatasetCollection())
def read_exit_code_from(exit_code_file, id_tag):
"""Read exit code reported for a Galaxy job."""
try:
# This should be an 8-bit exit code, but read ahead anyway:
exit_code_str = open(exit_code_file, "r").read(32)
except Exception:
# By default, the exit code is 0, which typically indicates success.
exit_code_str = "0"
try:
# Decode the exit code. If it's bogus, then just use 0.
exit_code = int(exit_code_str)
except ValueError:
assert sort_comp in ["lexical", "numeric"]
key = operator.attrgetter(sort_key)
if sort_comp == "numeric":
key = _compose(int, key)
return sorted(matches, key=key, reverse=reverse)
def _compose(f, g):
return lambda x: f(g(x))
DEFAULT_DATASET_COLLECTOR = DatasetCollector(
DEFAULT_DATASET_COLLECTOR_DESCRIPTION)
DEFAULT_TOOL_PROVIDED_DATASET_COLLECTOR = ToolMetadataDatasetCollector(
ToolProvidedMetadataDatasetCollection())
def read_exit_code_from(exit_code_file, id_tag):
"""Read exit code reported for a Galaxy job."""
try:
# This should be an 8-bit exit code, but read ahead anyway:
exit_code_str = open(exit_code_file).read(32)
except Exception:
# By default, the exit code is 0, which typically indicates success.
exit_code_str = "0"
try:
# Decode the exit code. If it's bogus, then just use 0.
exit_code = int(exit_code_str)
except ValueError: