# You should have received a copy of the GNU General Public License # along with gcMapExplorer. If not, see <http://www.gnu.org/licenses/>. # #============================================================================= import os import sys import re import argparse import gcMapExplorer.lib as gmlib from gcMapExplorer.config import getConfig # get configuration config = getConfig() description = \ """To calculate overall/block-wise correlation between contact maps =================================================================== This tool can be used to calculate correlation betweem two contact maps. With option "-bs/--block-size", it calculates correlation along the blocks of input size. Without this option, it calculates correlation between entire maps. NOTE: Both input files should be in SAME format. =================================================================== """
# You should have received a copy of the GNU General Public License # along with gcMapExplorer. If not, see <http://www.gnu.org/licenses/>. # #============================================================================= import os import sys import re import argparse import gcMapExplorer.lib as gmlib from gcMapExplorer.config import getConfig # get configuration config = getConfig() description = \ """Import a bed file to HDF5 format h5 file ============================================ bed file can be converted into gcMapExplorer compatible HDF5 file using this tool. This HDF5 file can be loaded into gcMapExplorer browser for interactive visualization. This tool does not require any external program. Resolutions =========== By default, original data are downsampled to following resolutions: '1kb', '2kb', '4kb', '5kb', '8kb', '10kb', '20kb', '40kb', '80kb', '100kb', '160kb',
