def move_to_data_processing(mainWindow):
if mainWindow.controller.verbose == True:
print "moving to data processing"
if mainWindow.controller.homeDir == None:
mainWindow.display_info('To begin either load an existing project or create a new one')
return False
if mainWindow.dockWidget != None:
mainWindow.remove_left_dock()
## prepare variables
mainWindow.log.log['currentState'] = "Data Processing"
allGeneLists = get_gene_list_names(mainWindow.controller.homeDir)
mainWindow.mainWidget = QtGui.QWidget(mainWindow)
currentAction = mainWindow.log.log['dataProcessingAction']
#if mainWindow.log.log['checksArray'] == None:
# mainWindow.log.log['checksArray'] = np.zeros([len(fileList),len(masterChannelList)],)
#checksArray = mainWindow.log.log['checksArray']
#if mainWindow.mainWidget:
# mainWindow.mainWidget.destroy()
## ready a DataProcessingCenter class
if len(allGeneLists) == 0:
mainWindow.dpc = BlankPage(parent=mainWindow.mainWidget)
mainWindow.dpc.change_label("To get started load a gene list")
else:
mainWindow.dpc = DataProcessingCenter(allGeneLists,controller=mainWindow.controller,parent=mainWindow.mainWidget)
hbl = QtGui.QHBoxLayout(mainWindow.mainWidget)
hbl.setAlignment(QtCore.Qt.AlignTop)
hbl.addWidget(mainWindow.dpc)
mainWindow.refresh_main_widget()
## set main widget size
widgetWidth = 0.70 * mainWindow.screenWidth
mainWindow.mainWidget.setMaximumWidth(widgetWidth)
mainWindow.mainWidget.setMinimumWidth(widgetWidth)
mainWindow.add_left_dock()
mainWindow.track_highest_state()
mainWindow.controller.save()
if mainWindow.pDock != None:
mainWindow.pDock.set_btn_highlight('data processing')
return True
def testGetAllGeneLists(self):
allGeneLists = get_gene_list_names(self.homeDir)
self.assertEqual(len(allGeneLists), 1)
def add_left_dock(mainWindow):
if mainWindow.dockWidget != None:
remove_left_dock(mainWindow)
if mainWindow.controller.homeDir == None:
noProject = True
mainWindow.mainDockWidget = QtGui.QDockWidget("no project loaded", mainWindow)
else:
noProject = False
allGeneLists = get_gene_list_names(mainWindow.controller.homeDir)
mainWindow.mainDockWidget = QtGui.QDockWidget(mainWindow.controller.projectID, mainWindow)
mainWindow.mainDockWidget.setObjectName("MainDockWidget")
mainWindow.mainDockWidget.setAllowedAreas(QtCore.Qt.LeftDockWidgetArea | QtCore.Qt.RightDockWidgetArea)
mainWindow.dockWidget = QtGui.QWidget(mainWindow)
palette = mainWindow.dockWidget.palette()
role = mainWindow.dockWidget.backgroundRole()
palette.setColor(role, QtGui.QColor("black"))
mainWindow.dockWidget.setPalette(palette)
mainWindow.dockWidget.setAutoFillBackground(True)
# setup alignments
masterBox = QtGui.QVBoxLayout(mainWindow.dockWidget)
vbox1 = QtGui.QVBoxLayout()
vbox1.setAlignment(QtCore.Qt.AlignTop)
hbox1 = QtGui.QHBoxLayout()
hbox1.setAlignment(QtCore.Qt.AlignCenter)
vbox2 = QtGui.QVBoxLayout()
vbox2.setAlignment(QtCore.Qt.AlignBottom)
hbox2 = QtGui.QHBoxLayout()
hbox2.setAlignment(QtCore.Qt.AlignCenter)
widgetWidth = 0.15 * mainWindow.screenWidth
mainWindow.dockWidget.setMaximumWidth(widgetWidth)
mainWindow.dockWidget.setMinimumWidth(widgetWidth)
if mainWindow.log.log["currentState"] == "initial":
mainWindow.dock1 = InitialDock1(
contBtnFn=False,
addBtnFn=False,
speciesFn=False,
message="To begin select 'file' \nand create/load a project",
)
mainWindow.dock1.setAutoFillBackground(True)
hbox1.addWidget(mainWindow.dock1)
elif mainWindow.log.log["currentState"] == "Data Processing":
mainWindow.dock1 = InitialDock1(contBtnFn=False, addBtnFn=mainWindow.add_files_to_project)
mainWindow.dock1.setAutoFillBackground(True)
hbox1.addWidget(mainWindow.dock1)
## add the pipeline dock
add_pipeline_dock(mainWindow)
hbox2.addWidget(mainWindow.pDock)
## finalize alignments
vbox1.addLayout(hbox1)
vbox2.addLayout(hbox2)
masterBox.addLayout(vbox1)
masterBox.addLayout(vbox2)
# vbox.addLayout(vbl3)
mainWindow.mainDockWidget.setWidget(mainWindow.dockWidget)
mainWindow.addDockWidget(QtCore.Qt.LeftDockWidgetArea, mainWindow.mainDockWidget)
## file selector
"""