def test_template_merge():
template_1 = gt.Template()
template_1.parse("A/1\tAAA\t###\t0\t-\n")
template_2 = gt.Template()
template_2.parse("A/1\tAAA\t###\t1\tchr1:+:50:3")
template_1.merge(template_2)
assert template_1.to_map(
) == "A/1\tAAA\t###\t1\tchr1:+:50:3", "Not '%s'" % template_1.to_map()
def test_template_to_sequence():
template = gt.Template()
template.parse("A/1\tAAA\t###\t0\t-\n")
assert template.to_sequence(
) == "@A/1\nAAA\n+\n###", "Not '%s'" % template.to_sequence()
template.parse("A/1\tAAA\t\t0\t-\n")
assert template.to_fasta(
) == ">A/1\nAAA", "Not '%s'" % template.to_sequence()
def test_template_to_map():
template = gt.Template()
template.parse("A/1\tAAA\t\t0\t-\n")
assert template.to_map(
) == "A/1\tAAA\t\t0\t-", "Not '%s'" % template.to_map()
def test_template_no_qualities():
template = gt.Template()
template.parse("A/1\tAAA\t\t0\t-\n")
assert template.qualities == ""
def test_template_read():
template = gt.Template()
template.parse("A/1\tAAA\t###\t0\t-\n")
assert template.read == "AAA"
def test_template_length():
template = gt.Template()
template.parse("A/1\tAAA\t###\t0\t-\n")
assert template.length == 3
def test_template_map_parsing():
template = gt.Template()
template.parse("A/1\tAAA\t###\t0\t-\n")
assert template.tag == "A"