def test_abort_error_ensg_and_gene_symbol(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_specific_interaction(
ensg_number=["ENSGfoobar"], gene_symbol=["foobar"]), 404)
def test_abort_error_limit(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_specific_interaction(
disease_name="foobar", limit=20000), 404)
def test_abort_error_no_data(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_specific_interaction(
disease_name="bladder urothelial carcinoma",
ensg_number=['ENSG00000023041']), 404)
def test_findSpecific_disease_and_gene_symbol(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_specific_interaction(
disease_name='bladder urothelial carcinoma',
gene_symbol=['CALB2', 'TIGAR'],
limit=50)
# retrieve current API response to request
api_response = geneInteraction.read_specific_interaction(
disease_name='bladder urothelial carcinoma',
gene_symbol=['CALB2', 'TIGAR'],
limit=50)
# assert that the two output the same
self.assertEqual(mock_response, api_response)
def test_findSpecific_disease_and_ensg(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_specific_interaction(
disease_name='bladder urothelial carcinoma',
ensg_number=['ENSG00000172137', 'ENSG00000078237'],
limit=50)
# retrieve current API response to request
api_response = geneInteraction.read_specific_interaction(
disease_name='bladder urothelial carcinoma',
ensg_number=['ENSG00000172137', 'ENSG00000078237'],
limit=50)
# assert that the two output the same
self.assertEqual(mock_response, api_response)