def get_gene(variant):
for anno in annos:
consequences = variant.INFO[anno].split(",")
effs = (Effect.new(anno, c, annos[anno]) for c in consequences)
# limit to requested severity
if severity is not None:
effs = [e for e in effs if e.impact_severity in severity]
effs = sorted(effs, reverse=True)
for eff in effs:
if eff.gene:
return eff.gene
def get_gene(variant):
for anno in annos:
consequences = variant.INFO[anno].split(",")
effs = (Effect.new(anno, c, annos[anno]) for c in consequences)
# limit to requested severity
if severity is not None:
effs = [e for e in effs if e.impact_severity in severity]
effs = sorted(effs, reverse=True)
for eff in effs:
if eff.gene:
return eff.gene
