def __init__(self, dims=None, units=None, resolution=None,
n_object=None, n_slice=None):
Object.__init__(self, name='box',
dims=np.array(dims, dtype=np.float64),
units=units, resolution=resolution,
n_object=n_object, n_slice=n_slice)
if not isinstance(self.n_slice, dict):
self.n_slice = {'z' : int(self.n_slice)}
self.init_trait('volume', np.prod(self.dims))
self._axis_map = {'x' : [1, 2, 0], 'y' : [2, 0, 1], 'z' : [0, 1, 2]}
def __init__(self, semiaxes):
"""
Parameters:
semiaxes : (float, float, float)
The semiaxes a, b, c of the ellipsoid.
"""
self.semiaxes = np.array(semiaxes, dtype=np.float64)
self.mtx0 = np.diag(1.0 / (self.semiaxes**2))
im = self.semiaxes.argmax()
self.direction0 = np.eye(3, dtype=np.float64)[im]
self.volume = 4.0 / 3.0 * np.pi * np.prod(self.semiaxes)
self.surface = self.compute_approximate_surface()
self.length = self.semiaxes[im]
self.is_placed = False
self.intersection_counters = {}
self.intersector = EllipsoidIntersector()
def __init__(self, semiaxes):
"""
Parameters:
semiaxes : (float, float, float)
The semiaxes a, b, c of the ellipsoid.
"""
self.semiaxes = np.array(semiaxes, dtype=np.float64)
self.mtx0 = np.diag(1.0 / (self.semiaxes**2))
im = self.semiaxes.argmax()
self.direction0 = np.eye(3, dtype=np.float64)[im]
self.volume = 4.0 / 3.0 * np.pi * np.prod(self.semiaxes)
self.surface = self.compute_approximate_surface()
self.length = self.semiaxes[im]
self.is_placed = False
self.intersection_counters = {}
self.intersector = EllipsoidIntersector()
def get_pixel_area(self, axis):
"""
Get the area in pixels squared of a slice for the given axis.
"""
return np.prod(self.get_pixel_sizes(axis))
def get_area(self, axis):
"""
Get the area of a slice for the given axis.
"""
return np.prod(self.get_sizes(axis))
