async def get_transfer_globus(globus_transfer_id: str,
transfer_client: TransferClient):
"""This function gets status of globus transfer"""
#transfer_client = await get_transfer_client(request)
transfer_response = None
try:
transfer_result = transfer_client.get_task(globus_transfer_id)
transfer_result_json = json.loads(str(transfer_result))
transfer_response = {'globus_response': transfer_result_json}
transfer_response['status'] = 200
return transfer_response
except GlobusAPIError as e:
# Error response from the REST service, check the code and message for
# details.
# Error response from the REST service, check the code and message for
# details.
return handle_globus_api_error(e)
return transfer_response
except NetworkError:
logging.error(("Network Failure. "
"Possibly a firewall or connectivity issue"))
raise
except GlobusError:
logging.exception("Totally unexpected GlobusError!")
raise
def transfer_status(task_id):
"""
Call Globus to get status/details of transfer with
task_id.
The target template (tranfer_status.jinja2) expects a Transfer API
'task' object.
'task_id' is passed to the route in the URL as 'task_id'.
"""
transfer = TransferClient(authorizer=RefreshTokenAuthorizer(
session['tokens']['transfer.api.globus.org']['refresh_token'],
load_portal_client()))
task = transfer.get_task(task_id)
return render_template('transfer_status.jinja2', task=task)
def status(self):
token = TokenStore.get_transfer_token(self.user)
tc = TransferClient(authorizer=AccessTokenAuthorizer(token))
old = json.loads(self.task_catalog or '{}')
tasks = {
t: tc.get_task(t).data
for t in json.loads(self.transfer_task_ids)
if not old.get(t) or old[t]['status'] == 'ACTIVE'
}
old.update(tasks)
tasks = old
transferred = [t['files_transferred'] for t in tasks.values()]
log.debug(transferred)
self.files_transferred = reduce(lambda x, y: x + y, transferred)
log.debug(self.files_transferred)
self.task_catalog = json.dumps(tasks)
self.save()
statuses = [s['status'] for s in tasks.values()]
if any(filter(lambda stat: stat in ['INACTIVE', 'FAILED'], statuses)):
return 'FAILED'
if any(filter(lambda stat: stat == 'ACTIVE', statuses)):
return 'ACTIVE'
return 'SUCCEEDED'
def do_job(self,tokens, task_color,stage_in_source,stage_in_dest,stage_out_dest,stage_in_source_path,stage_in_dest_path,stage_out_dest_path):
def post_refresh_message(token_data):
print("I got called")
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'key_message':token_data.by_resource_server['transfer.api.globus.org']['access_token'], 'task_id':task_id,'step':'1','task_color':task_color}))
#socketio.emit('message_log', {'message_body':'Testing for emit'})
auth_client = dill.loads(redis_store.get('auth_client'))
#send json message with key special_message that include new access token
#requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'key_message':token_data.by_resource_server['transfer.api.globus.org']['access_token'], 'task_id':task_id}
authorizer = globus_sdk.RefreshTokenAuthorizer(tokens['transfer.api.globus.org']['refresh_token'], auth_client,tokens['transfer.api.globus.org']['access_token'], expires_at=tokens['transfer.api.globus.org']['expires_at_seconds'],on_refresh=post_refresh_message)
#stage_in_source = stage_in_source
stage_in_destination= stage_in_dest
stage_out_destination = stage_out_dest
#stage_in_source_path = redis_store.get('stage_in_source_path').decode('utf-8')
stage_in_destination_path = stage_in_dest_path
stage_out_destination_path = stage_out_dest_path
task_id = do_job.request.id
tc = TransferClient(authorizer=authorizer)
#auth_client=load_auth_client()
data = globus_sdk.TransferData(tc,stage_in_source, stage_in_destination,label="stagein")
data.add_item(stage_in_source_path, stage_in_destination_path, True)
status = tc.submit_transfer(data)
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+']Queue wait is done, now initiating Stage in....','task_id':task_id,'step':'2','task_color':task_color}))
tc.task_wait(status["task_id"])#task id of the stage_in
result_in=tc.get_task(status["task_id"])
#print("The response for task is :")
#print(result_in)
complete_status = result_in['status']
print("The complete status is :")
print(complete_status)
if complete_status == "SUCCEEDED":
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+'] Stage In succeeded', 'task_id':task_id,'step':'2','task_color':task_color}))
else:
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+'] Stage In failed, canceling the job..... ','task_id':task_id,'step':'2','task_color':task_color}))
# stop and delete the job
raise Reject("Stage in Failed",requeue=False)
#print to the log that job informations, with id, running the fake job
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+']Running the job','task_id':task_id,'step':'3','task_color':task_color}))
time.sleep(3)
#fetching new token
#validate now active
#fake job is done
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+']Job is done','task_id':task_id,'step':'3','task_color':task_color}))
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+'] Initiating Stage out.... ','task_id':task_id,'step':'4','task_color':task_color}))
#tc = TransferClient(authorizer=authorizer)
data = globus_sdk.TransferData(tc, stage_in_destination, stage_out_destination,label="stageout")
data.add_item(stage_in_destination_path, stage_out_destination_path, True)
#hopefully refresh token lambda called here or after here supposed to log refreshed ok
status = tc.submit_transfer(data)
tc.task_wait(status["task_id"])
result_in=tc.get_task(status["task_id"])
complete_status = result_in['status']
if complete_status == "SUCCEEDED":
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+'] Stage Out succeeded ','task_id':task_id,'step':'4','task_color':task_color}))
else:
requests.post('http://localhost:8081/api/messenger', headers={'content-type': 'application/json'},data=json.dumps({'message':'['+task_id+'] Stage Out failed, canceling the job.....','task_id':task_id,'step':'4','task_color':task_color}))
raise Reject("Stage out Failed",requeue=False)
def globus_transfer( # noqa: C901
remote_endpoint,
remote_path,
name,
transfer_type,
non_blocking=False):
"""
Read the local globus endpoint UUID from ~/.zstash.ini.
If the ini file does not exist, create an ini file with empty values,
and try to find the local endpoint UUID based on the FQDN
"""
ini_path = os.path.expanduser("~/.zstash.ini")
ini = configparser.ConfigParser()
local_endpoint = None
if ini.read(ini_path):
if "local" in ini.sections():
local_endpoint = ini["local"].get("globus_endpoint_uuid")
else:
ini["local"] = {"globus_endpoint_uuid": ""}
try:
with open(ini_path, "w") as f:
ini.write(f)
except Exception as e:
logger.error(e)
sys.exit(1)
if not local_endpoint:
fqdn = socket.getfqdn()
for pattern in regex_endpoint_map.keys():
if re.fullmatch(pattern, fqdn):
local_endpoint = regex_endpoint_map.get(pattern)
break
if not local_endpoint:
logger.error(
"{} does not have the local Globus endpoint set".format(ini_path))
sys.exit(1)
if remote_endpoint.upper() in hpss_endpoint_map.keys():
remote_endpoint = hpss_endpoint_map.get(remote_endpoint.upper())
if transfer_type == "get":
src_ep = remote_endpoint
src_path = os.path.join(remote_path, name)
dst_ep = local_endpoint
dst_path = os.path.join(os.getcwd(), name)
else:
src_ep = local_endpoint
src_path = os.path.join(os.getcwd(), name)
dst_ep = remote_endpoint
dst_path = os.path.join(remote_path, name)
subdir = os.path.basename(os.path.normpath(remote_path))
subdir_label = re.sub("[^A-Za-z0-9_ -]", "", subdir)
filename = name.split(".")[0]
label = subdir_label + " " + filename
native_client = NativeClient(
client_id="6c1629cf-446c-49e7-af95-323c6412397f",
app_name="Zstash",
default_scopes=
"openid urn:globus:auth:scope:transfer.api.globus.org:all",
)
native_client.login(no_local_server=True, refresh_tokens=True)
transfer_authorizer = native_client.get_authorizers().get(
"transfer.api.globus.org")
tc = TransferClient(transfer_authorizer)
for ep_id in [src_ep, dst_ep]:
r = tc.endpoint_autoactivate(ep_id, if_expires_in=600)
if r.get("code") == "AutoActivationFailed":
logger.error(
"The {} endpoint is not activated or the current activation expires soon. Please go to https://app.globus.org/file-manager/collections/{} and (re)activate the endpoint."
.format(ep_id, ep_id))
sys.exit(1)
td = TransferData(
tc,
src_ep,
dst_ep,
label=label,
sync_level="checksum",
verify_checksum=True,
preserve_timestamp=True,
fail_on_quota_errors=True,
)
td.add_item(src_path, dst_path)
try:
task = tc.submit_transfer(td)
except TransferAPIError as e:
if e.code == "NoCredException":
logger.error(
"{}. Please go to https://app.globus.org/endpoints and activate the endpoint."
.format(e.message))
else:
logger.error(e)
sys.exit(1)
except Exception as e:
logger.error("Exception: {}".format(e))
sys.exit(1)
if non_blocking:
return
try:
task_id = task.get("task_id")
"""
A Globus transfer job (task) can be in one of the three states:
ACTIVE, SUCCEEDED, FAILED. The script every 20 seconds polls a
status of the transfer job (task) from the Globus Transfer service,
with 20 second timeout limit. If the task is ACTIVE after time runs
out 'task_wait' returns False, and True otherwise.
"""
while not tc.task_wait(task_id, 20, 20):
pass
"""
The Globus transfer job (task) has been finished (SUCCEEDED or FAILED).
Check if the transfer SUCCEEDED or FAILED.
"""
task = tc.get_task(task_id)
if task["status"] == "SUCCEEDED":
logger.info(
"Globus transfer {}, from {}{} to {}{} succeeded".format(
task_id, src_ep, src_path, dst_ep, dst_path))
else:
logger.error("Transfer FAILED")
except TransferAPIError as e:
if e.code == "NoCredException":
logger.error(
"{}. Please go to https://app.globus.org/endpoints and activate the endpoint."
.format(e.message))
else:
logger.error(e)
sys.exit(1)
except Exception as e:
logger.error("Exception: {}".format(e))
sys.exit(1)
def transfer(sp,destination_endpoint_id,one_endpoint):
tokens = None
try:
# if we already have tokens, load and use them
tokens = load_tokens_from_file(TOKEN_FILE)
except:
pass
if not tokens:
# if we need to get tokens, start the Native App authentication process
tokens = do_native_app_authentication(CLIENT_ID, REDIRECT_URI, SCOPES)
try:
save_tokens_to_file(TOKEN_FILE, tokens)
except:
pass
transfer_tokens = tokens['transfer.api.globus.org']
auth_client = NativeAppAuthClient(client_id=CLIENT_ID,environment='sandbox')
authorizer = RefreshTokenAuthorizer(
transfer_tokens['refresh_token'],
auth_client,
access_token=transfer_tokens['access_token'],
expires_at=transfer_tokens['expires_at_seconds'],
on_refresh=update_tokens_file_on_refresh)
#transfer = TransferClient(authorizer=authorizer,environment='sandbox')
tc = TransferClient(authorizer=authorizer, environment="sandbox")
##################---ENDPOINTS---###########################
source_endpoint_id = '5a2e5704-b028-11e7-bdad-22000bdb2406' #sb vmtb4
#source_endpoint_id = '55705028-aa15-11e7-bdad-22000bdb2406' #sb yulie7t
#source_endpoint_id = 'b0b16296-88e7-11e7-a971-22000a92523b' #bare chameleon
#source_endpoint_id = 'e5762bc2-8466-11e7-a8ed-22000a92523b' #large_chameleon
#source_endpoint_id = '8b26cc0e-877b-11e7-a949-22000a92523b'#ubuntu-vm
#source_endpoint_id = 'ad19b012-77cf-11e7-8b98-22000b9923ef'#chameleon
# source_endpoint_id = raw_input('Input source endpoint UUID: ')
#destination path
##############---SOURCE PATH---######################
#source_path = '/home/parallels/stream_transfer/test_files/'
#source_path = '/home/parallels/stream_transfer/zero_globus/test_files/'
source_path = sp
#source_path ='/home/cc/streaming/zero_globus/test_files/test.txt'
#source_path = '/home/parallels/stream_transfer/zero_globus/test_files/test.txt'
#destination path
destination_path = '/~/'
#destination_path = '/~/'+ sp.split("/")[-1] #use for one file
##if one_endpoint:
## destination_path = '/projects/BrainImagingADSP/yzamora/'
##else:
## destination_path = '/projects/BrainImagingADSP/yzamora/'+ sp.split("/")[-1] #use for one file
#Using my sample UUID from globus tutorial
#destination_endpoint_id = 'ddb59aef-6d04-11e5-ba46-22000b92c6ec' #globus
#destination_endpoint_id = '5d1da0fe-3c07-11e7-bcfc-22000b9a448b' #laptop
#tc.endpoint_autoactivate(source_endpoint_id)
#tc.endpoint_autoactive(destination_endpoint_id)
ep1 = tc.get_endpoint(destination_endpoint_id)
tc.endpoint_autoactivate(destination_endpoint_id)
#ep1 is setting the activated endpoint to be a variable to work with
tc.endpoint_autoactivate(source_endpoint_id)
label = "medium data transfer"
#tdata = globus_sdk.TransferData(tc, source_endpoint_id, destination_endpoint_id,label=label, sync_level='0')
tdata = globus_sdk.TransferData(tc, source_endpoint_id, destination_endpoint_id,label=label, perf_cc=3, sync_level=None, verify_checksum=False)
#tdata = globus_sdk.TransferData(tc, source_endpoint_id, destination_endpoint_id,label=label)
if one_endpoint:
tdata.add_item(source_path,destination_path,recursive=True)
else:
tdata.add_item(source_path,destination_path,recursive=False)
submit_result = tc.submit_transfer(tdata)
print("Task ID:", submit_result["task_id"])
"""
Checking for time completion using globus calls
"""
#print("Completion time:", submit_result["completion_time"])
#setup of the transfer, submits as a https post request
#transfer_data = TransferData(transfer_client=tc,
# source_endpoint=source_endpoint_id,
# destination_endpoint=destination_endpoint_id,
# label='Transfer',
# sync_level='checksum')
#transfer_data.add_item(source_path=source_path,destination_path=destination_path, recursive=False)
#task_id=transfer.submit_transfer(transfer_data)['task_id']
#waiting for file to transfer
status = tc.get_task(submit_result["task_id"],fields="status")["status"]
poll_interval = 2
max_wait = 90
wait_time = 0
while not (status in ["SUCCEEDED", "FAILED"]):
if (wait_time >= max_wait): break
print("Task not yet complete (status {}), sleeping for {} seconds..." \
.format(status, poll_interval))
time.sleep(poll_interval)
wait_time += poll_interval
status = tc.get_task(submit_result["task_id"], fields="status")["status"]
if status == "FAILED":
print("WARNING! File transfer FAILED!")
#deleting file after transfer
if status == "SUCCEEDED":
end_time = datetime.datetime.utcnow()
start_time = end_time - datetime.timedelta(minutes=200)
#limit = response objects
# data = tc.task_list(filter="type:TRANSFER,DELETE/request_time:%s,%s"
# % (start_time, end_time), limit=5)
#print("File transfer SUCCEEDED, will delete file from local directory now")
""" r = tc.task_list(num_results=1, filter="type:TRANSFER,DELETE")
class TestGlobus(TestZstash):
def preactivate_globus(self):
"""
Read the local globus endpoint UUID from ~/.zstash.ini.
If the ini file does not exist, create an ini file with empty values,
and try to find the local endpoint UUID based on the FQDN
"""
local_endpoint = None
ini_path = os.path.expanduser("~/.zstash.ini")
ini = configparser.ConfigParser()
if ini.read(ini_path):
if "local" in ini.sections():
local_endpoint = ini["local"].get("globus_endpoint_uuid")
else:
ini["local"] = {"globus_endpoint_uuid": ""}
try:
with open(ini_path, "w") as f:
ini.write(f)
except Exception as e:
self.fail(e)
if not local_endpoint:
fqdn = socket.getfqdn()
for pattern in regex_endpoint_map.keys():
if re.fullmatch(pattern, fqdn):
local_endpoint = regex_endpoint_map.get(pattern)
break
if not local_endpoint:
# self.fail("{} does not have the local Globus endpoint set".format(ini_path))
self.skipTest(
"{} does not have the local Globus endpoint set".format(
ini_path))
native_client = NativeClient(
client_id="6c1629cf-446c-49e7-af95-323c6412397f",
app_name="Zstash",
default_scopes=
"openid urn:globus:auth:scope:transfer.api.globus.org:all",
)
native_client.login(no_local_server=True, refresh_tokens=True)
transfer_authorizer = native_client.get_authorizers().get(
"transfer.api.globus.org")
self.transfer_client = TransferClient(transfer_authorizer)
for ep_id in [hpss_globus_endpoint, local_endpoint]:
r = self.transfer_client.endpoint_autoactivate(ep_id,
if_expires_in=600)
if r.get("code") == "AutoActivationFailed":
self.fail(
"The {} endpoint is not activated or the current activation expires soon. Please go to https://app.globus.org/file-manager/collections/{} and (re)-activate the endpoint."
.format(ep_id, ep_id))
def delete_files_globus(self):
ep_id = hpss_globus_endpoint
r = self.transfer_client.endpoint_autoactivate(ep_id, if_expires_in=60)
if r.get("code") == "AutoActivationFailed":
self.fail(
"The {} endpoint is not activated. Please go to https://app.globus.org/file-manager/collections/{} and activate the endpoint."
.format(ep_id, ep_id))
ddata = DeleteData(self.transfer_client,
hpss_globus_endpoint,
recursive=True)
ddata.add_item("/~/zstash_test/")
try:
task = self.transfer_client.submit_delete(ddata)
task_id = task.get("task_id")
"""
A Globus transfer job (task) can be in one of the three states:
ACTIVE, SUCCEEDED, FAILED. The script every 5 seconds polls a
status of the transfer job (task) from the Globus Transfer service,
with 5 second timeout limit. If the task is ACTIVE after time runs
out 'task_wait' returns False, and True otherwise.
"""
while not self.transfer_client.task_wait(task_id, 5, 5):
task = self.transfer_client.get_task(task_id)
if task.get("is_paused"):
break
"""
The Globus transfer job (task) has been finished (SUCCEEDED or FAILED),
or is still active (ACTIVE). Check if the transfer SUCCEEDED or FAILED.
"""
task = self.transfer_client.get_task(task_id)
if task["status"] == "SUCCEEDED":
pass
elif task.get("status") == "ACTIVE":
if task.get("is_paused"):
pause_info = self.transfer_client.task_pause_info(task_id)
paused_rules = pause_info.get("pause_rules")
reason = paused_rules[0].get("message")
message = "The task was paused. Reason: {}".format(reason)
print(message)
else:
message = "The task reached a {} second deadline\n".format(
24 * 3600)
print(message)
self.transfer_client.cancel_task(task_id)
else:
print("Globus delete FAILED")
except TransferAPIError as e:
if e.code == "NoCredException":
self.fail(
"{}. Please go to https://app.globus.org/endpoints and activate the endpoint."
.format(e.message))
else:
self.fail(e)
except Exception as e:
self.fail("{} - exception: {}".format(self, e))
def tearDown(self):
"""
Tear down a test. This is run after every test method.
After the script has failed or completed, remove all created files, even those on the HPSS repo.
"""
os.chdir(TOP_LEVEL)
print("Removing test files, both locally and at the HPSS repo")
# self.cache may appear in any of these directories,
# but should not appear at the same level as these.
# Therefore, there is no need to explicitly remove it.
for d in [self.test_dir, self.backup_dir]:
if os.path.exists(d):
shutil.rmtree(d)
if self.hpss_path and self.hpss_path.lower().startswith("globus:"):
self.delete_files_globus()
def helperLsGlobus(self,
test_name,
hpss_path,
cache=None,
zstash_path=ZSTASH_PATH):
"""
Test `zstash ls --hpss=globus://...`.
"""
self.preactivate_globus()
self.hpss_path = hpss_path
if cache:
# Override default cache
self.cache = cache
cache_option = " --cache={}".format(self.cache)
else:
cache_option = ""
use_hpss = self.setupDirs(test_name)
self.create(use_hpss, zstash_path, cache=self.cache)
self.assertWorkspace()
os.chdir(self.test_dir)
for option in ["", "-v", "-l"]:
print_starred("Testing zstash ls {}".format(option))
cmd = "{}zstash ls{} {} --hpss={}".format(zstash_path,
cache_option, option,
self.hpss_path)
output, err = run_cmd(cmd)
self.check_strings(cmd, output + err, ["file0.txt"], ["ERROR"])
os.chdir(TOP_LEVEL)
def testLs(self):
self.helperLsGlobus("testLsGlobus",
f"globus://{hpss_globus_endpoint}/~/zstash_test/")
def validate():
params = request.json
crawl_id = params["crawl_id"]
globus_eid = params["globus_eid"]
transfer_token = params["transfer_token"]
source_destination = params["source_destination"]
dataset_info = params["dataset_info"] # To be implemented later
client = boto3.client('sqs',
aws_access_key_id=os.environ["aws_access"],
aws_secret_access_key=os.environ["aws_secret"],
region_name='us-east-1')
try:
response = client.get_queue_url(
QueueName=f'validate_{crawl_id}',
QueueOwnerAWSAccountId=os.environ["aws_account_id"])
except: # Add SQS.Client.exceptions.QueueDoesNotExist error
abort(400, "Invalid crawl ID")
try:
authorizer = AccessTokenAuthorizer(transfer_token)
tc = TransferClient(authorizer=authorizer)
except: # Add exception
abort(400, "Invalid transfer token")
crawl_queue = response["QueueUrl"]
date = datetime.datetime.now()
file_name = date.strftime("%m_%d_%Y-%H_%M_%S") + ".txt"
try:
with open(file_name, "w") as f:
while True:
sqs_response = client.receive_message(
QueueUrl=crawl_queue,
MaxNumberOfMessages=1, # To be toggled
WaitTimeSeconds=1)
if "Messages" not in sqs_response:
# xtract_status = requests.get(f"{eb_url}/get_extract_status", json={"crawl_id": crawl_id})
# print("HERE")
# print(xtract_status.content)
# xtract_content = json.loads(xtract_status.content)
# # print(xtract_content)
#
# if xtract_content["IDLE"] == 0 and xtract_content["PENDING"] == 0:
break
del_list = []
for message in sqs_response["Messages"]:
message_body = message["Body"]
# PROCESS MESSAGE_BODY
f.write(message_body)
# print(message_body)
del_list.append({
'ReceiptHandle': message["ReceiptHandle"],
'Id': message["MessageId"]
})
if len(del_list) > 0:
client.delete_message_batch(QueueUrl=crawl_queue,
Entries=del_list)
tdata = TransferData(
tc,
"5ecf6444-affc-11e9-98d4-0a63aa6b37da", #TODO: Add source endpoint
globus_eid,
label=f"{crawl_id}")
tdata.add_item(os.path.abspath(file_name),
os.path.join(source_destination, file_name))
tc.endpoint_autoactivate(
"5ecf6444-affc-11e9-98d4-0a63aa6b37da") #TODO: Add source endpoint
tc.endpoint_autoactivate(globus_eid)
submit_result = tc.submit_transfer(tdata)
while True:
result = tc.get_task(submit_result['task_id'])
if result.data["status"] == "SUCCEEDED":
break
elif result.data["status"] == "FAILED":
raise RuntimeError # TODO: Change this
else:
time.sleep(0.5)
except Exception as e:
print(e)
abort(400, "Failed to validate")
finally:
os.remove(file_name)
return "[200] Submitted"
class Transfer:
'''
Modified Transfer, add an option to pass refresh token to avoid the web login
'''
def __init__(self,
src_endpoint_name,
dst_endpoint_name,
transfer_rt=None,
log_lv=logging.INFO):
log_format = '%(asctime)-15s %(levelname)s:\t class:%(name)s %(message)s'
logging.basicConfig(format=log_format)
self.logger = logging.getLogger(self.__class__.__name__)
self.logger.setLevel(log_lv)
self.logger.debug('CLIENT_ID: {0}'.format(CLIENT_ID))
self.client = NativeAppAuthClient(CLIENT_ID)
self.client.oauth2_start_flow(refresh_tokens=True)
if transfer_rt is not None:
self.authorizer = RefreshTokenAuthorizer(transfer_rt, self.client)
else:
authorize_url = self.client.oauth2_get_authorize_url()
print('Please go to this URL and login: {0}'.format(authorize_url))
get_input = getattr(__builtins__, 'raw_input', input)
auth_code = get_input(
'Please enter the code you get after login here: ').strip()
token_response = self.client.oauth2_exchange_code_for_tokens(
auth_code)
self.globus_auth_data = token_response.by_resource_server[
'auth.globus.org']
self.globus_transfer_data = token_response.by_resource_server[
'transfer.api.globus.org']
auth_token = self.globus_auth_data['access_token']
transfer_token = self.globus_transfer_data['access_token']
transfer_rt = self.globus_transfer_data['refresh_token']
transfer_at = self.globus_transfer_data['access_token']
expires_at_s = self.globus_transfer_data['expires_at_seconds']
self.authorizer = RefreshTokenAuthorizer(transfer_rt,
self.client,
access_token=transfer_at,
expires_at=expires_at_s)
self.transferClient = TransferClient(authorizer=self.authorizer)
self.src_endpoint = None
self.dst_endpoint = None
for ep in self.transferClient.endpoint_search(
filter_scope="shared-with-me"):
if ep["display_name"] == src_endpoint_name:
self.src_endpoint = ep
self.logger.info('Source endpoint: [{0}] {1}'.format(
self.src_endpoint['id'],
self.src_endpoint['display_name']))
if self.src_endpoint is None:
self.logger.error(
'No endpoint shared with you with name: {0}'.format(
src_endpoint_name))
raise LookupError
for ep in self.transferClient.endpoint_search(
filter_scope="my-endpoints"):
if ep['display_name'] == dst_endpoint_name:
self.dst_endpoint = ep
self.logger.info('Destination endpoint: [{0}] {1}'.format(
self.dst_endpoint['id'],
self.dst_endpoint['display_name']))
if self.dst_endpoint is None:
self.logger.error('You don\'t have endpoint named: {0}'.format(
dst_endpoint_name))
raise LookupError
def transfer_dir(self, src_dir, dst_dir):
transfer_data = TransferData(self.transferClient,
self.src_endpoint['id'],
self.dst_endpoint['id'])
transfer_data.add_item(src_dir, dst_dir, recursive=True)
result = self.transferClient.submit_transfer(transfer_data)
self.logger.info('task [{0}] {1}'.format(result['task_id'],
result['code']))
return result
def transfer_file(self, src_file, dst_file):
transfer_data = TransferData(self.transferClient,
self.src_endpoint['id'],
self.dst_endpoint['id'])
transfer_data.add_item(src_file, dst_file)
result = self.transferClient.submit_transfer(transfer_data)
self.logger.info('task_id [{0}] {1}'.format(result['task_id'],
result['code']))
return result
def ls_src_dir(self, path, ls_filter=''):
# using iteration to get every entry from result
# an entry contain two keys: 'name' and 'type'
# type define the entry is a file or folder
result = self.transferClient.operation_ls(self.src_endpoint['id'],
path=path,
filter=ls_filter)
for entry in result:
self.logger.debug('name: {0}\ttype: {1}'.format(
entry["name"], entry["type"]))
return result
def task_list(self, num_results=10):
result = self.transferClient.task_list(num_results=num_results)
for task in result:
self.logger.debug('task_id: [{0}]\t status: {1}'.format(
task['task_id'], task['status']))
result = self.transferClient.task_list(num_results=num_results)
return result
def get_task(self, task_id):
return self.transferClient.get_task(task_id)
