def get_missing_info(species, release, database_name) :
global ensembl_sql_hosts
if not release :
release = get_latest_release_sql(species)
genome_db_id, db_host, db_name = find_database_for_species(species, release, database_name)
return release, database_name, ensembl_sql_hosts[db_host]
def get_latest_release(self, species, database_name) :
try :
if self.method in ('sql', 'pycogent') :
return get_latest_release_sql(species, database_name)
elif self.method == 'biomart' :
return get_latest_release_biomart(species, database_name)
else :
self.log.fatal("%s not a valid download method" % method)
exit(1)
except KeyError :
self.log.fatal("%s not found in %s" % (species, database_name))
exit(1)
