def render_folder(server, _id, path):
'''
creation of .json and .h5 files within the child `analogsignal` folder '''
if _id:
g_session = session.init()
obj = g_session.pull('electrophysiology/analogsignal/%s' %_id)
server.create(path + "/meta.json", 33345, 33204)
server.write(path + "/meta.json", str(obj.__dict__), 0L)
# print("analogsi id: %s, data id: %s" %(_id, g_session._cache.h5_map[_id] ))
if g_session._cache._Cache__h5_map.has_key(_id): # if data.h5 exists in the gnode cache directory
server.create(path + "/data.h5", 33345, 33204)
server.write(path + "/data.h5", copy_content_h5(_id, g_session), 0L) # obj.tostring() != copy_content_h5()
def render_structure(server, config_file='../default.json', models_file='../requirements.json'):
'''
this function is used for rendering the structure of the `/analogsignals` folder.
The list of child folders are created within the `/analogsignals`. '''
# stop()
server.mkdir("/analogsignals", 509)
g_session = session.init(config_file, models_file)
items = g_session.ls('analogsignal', returnObj=True)
cacheFuse = dict()
for item in items:
if item.name:
cacheFuse[item.name] = item._gnode['id']
path = "/analogsignals/%s" %item.name
server.mkdir(path, 509, link=item._gnode['permalink'], _id=item._gnode['id'])
save_cacheFuse(cacheFuse)
cacheFuse[item.name] = item._gnode['id']
path = "/analogsignals/%s" %item.name
server.mkdir(path, 509, link=item._gnode['permalink'], _id=item._gnode['id'])
save_cacheFuse(cacheFuse)
def render_folder(server, _id, path):
'''
creation of .json and .h5 files within the child `analogsignal` folder '''
if _id:
g_session = session.init()
obj = g_session.pull('electrophysiology/analogsignal/%s' %_id)
server.create(path + "/meta.json", 33345, 33204)
server.write(path + "/meta.json", str(obj.__dict__), 0L)
# print("analogsi id: %s, data id: %s" %(_id, g_session._cache.h5_map[_id] ))
if g_session._cache._Cache__h5_map.has_key(_id): # if data.h5 exists in the gnode cache directory
server.create(path + "/data.h5", 33345, 33204)
server.write(path + "/data.h5", copy_content_h5(_id, g_session), 0L) # obj.tostring() != copy_content_h5()
def copy_content_h5(_id, gnodeSession):
file_cache = gnodeSession._cache._meta.cache_dir + "/%s.h5" %gnodeSession._cache._Cache__h5_map[_id]
with open(file_cache, 'r') as ifile:
content = ifile.read()
return content
if __name__ == '__main__':
config_file='../gnode_client/default.json'
models_file='../gnode_client/requirements.json'
g_session = session.init(config_file, models_file)
items = g_session.ls('analogsignal', returnObj=True)
# stop()
def __init__(self): self.g_session = session.init(GNODE_GONFIG, GNODE_MODELS)
