def __init_go2nt_w_usr(self, gos_all, usr_go2nt, prt_flds_all):
"""Combine GO object fields and format_txt."""
assert usr_go2nt, "go2nt HAS NO ELEMENTS"
from goatools.nt_utils import get_unique_fields
go2nts = [
usr_go2nt, self.gosubdag.go2nt,
self._get_go2nthdridx(gos_all)
]
usr_nt_flds = next(iter(
usr_go2nt.values()))._fields # Get any single value from a dict
flds = get_unique_fields([usr_nt_flds, prt_flds_all])
go2nt = get_dict_w_id2nts(gos_all, go2nts, flds)
return self._init_go2nt_aug(go2nt)
def run(fld_lists, expected):
"""Create unique field list. Check for PASS/FAIL."""
actual = get_unique_fields(fld_lists)
assert actual == expected, "ACTUAL({A}) != EXPECTED({E})".format(
A=" ".join(actual), E=" ".join(expected))