def __read_papi_v1_operation_metadata(
operation_id: str,
genomics_v1_client: Resource) -> Mapping[str, Any]:
"""Reads the operations metadata for a pipelines API v1 job ID. Returns a python dict"""
logger.info(
f'Reading PAPI v1 operation metadata for {operation_id}...')
result = genomics_v1_client.operations().get(
name=operation_id).execute()
return result
def _throw_if_error(client: discovery.Resource, project_id: str,
operation_id: str, operation_type: str) -> None:
operation = client.operations().get(project=project_id,
operation=operation_id).execute()
if 'error' in operation:
errors = operation['error'].get('errors', [])
error_messages = [
'code: {}\n message: {}'.format(error['code'], error['message'])
for error in errors
]
raise RuntimeError('Backup {} operation finished with '
'{} errors:\n{}'.format(operation_type,
str(len(errors)),
'\n'.join(error_messages)))
def _await_operation(client: discovery.Resource, project_id: str,
operation_id: str) -> None:
done = False
while True:
if done:
break
operation = client.operations().get(project=project_id,
operation=operation_id).execute()
current_status = operation['status']
if current_status in {'PENDING', 'RUNNING', 'UNKNOWN'}:
time.sleep(_SECONDS_BETWEEN_OPERATION_STATUS_CHECKS)
elif current_status == 'DONE':
done = True
else:
raise RuntimeError(
'Unrecognized operation status: {}'.format(current_status))
