Esempio n. 1
0
    def __init__(self, epsinf):
        """Constructor for the Dielectric class.

        Arguments:
        epsinf -- Static dielectric constant
                  at infinite distance from the solute.
        """
        NeedsGD.__init__(self)
        self.epsinf = float(epsinf)
        self.eps_gradeps = None  # eps_g, dxeps_g, dyeps_g, dzeps_g
        self.del_eps_del_g_g = None
Esempio n. 2
0
    def __init__(self, surface_calculator=None, volume_calculator=None):
        """Constructor for the Cavity class.

        Arguments:
        surface_calculator -- A SurfaceCalculator instance or None
        volume_calculator  -- A VolumeCalculator instance or None
        """
        NeedsGD.__init__(self)
        self.g_g = None
        self.del_g_del_n_g = None
        self.grad_g_vg = None
        self.surface_calculator = surface_calculator
        self.volume_calculator = volume_calculator
        self.V = None  # global Volume
        self.A = None  # global Surface
Esempio n. 3
0
 def __init__(self):
     NeedsGD.__init__(self)
     self.E = None
     self.delta_E_delta_n_g = None
     self.delta_E_delta_g_g = None
Esempio n. 4
0
 def __init__(self):
     NeedsGD.__init__(self)
     self.V = None
     self.delta_V_delta_g_g = None
Esempio n. 5
0
 def __init__(self):
     NeedsGD.__init__(self)
     self.A = None
     self.delta_A_delta_g_g = None
Esempio n. 6
0
 def __init__(self):
     NeedsGD.__init__(self)
     self.rho_g = None
     self.del_rho_del_n_g = None
     self.grad_rho_vg = None
Esempio n. 7
0
 def __init__(self):
     NeedsGD.__init__(self)
     self.u_g = None
     self.del_u_del_n_g = None
     self.grad_u_vg = None